Hb_007676_020

Information

Type -
Description -
Location Contig7676: 17815-25078
Sequence    

Annotation

kegg
ID pop:POPTR_0003s21700g
description POPTRDRAFT_758350; hypothetical protein
nr
ID XP_012093238.1
description PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Jatropha curcas]
swissprot
ID C6L7U1
description Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus GN=CERBERUS PE=2 SV=2
trembl
ID B9GYK6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s21700g PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase lin-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57464: 18515-19349 , PASA_asmbl_57466: 20910-21097 , PASA_asmbl_57467: 21230-21829
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007676_020 0.0 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Jatropha curcas]
2 Hb_001114_070 0.1316276619 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g58400 [Jatropha curcas]
3 Hb_008066_070 0.1473431659 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
4 Hb_020805_170 0.1545146127 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
5 Hb_000084_220 0.1661068068 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
6 Hb_006573_300 0.169081864 - - ATP binding protein, putative [Ricinus communis]
7 Hb_031862_040 0.1788325464 - - purine transporter, putative [Ricinus communis]
8 Hb_001268_120 0.1790086894 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002598_010 0.1804358795 - - sugar transporter, putative [Ricinus communis]
10 Hb_000174_140 0.1809358543 - - JHL23J11.8 [Jatropha curcas]
11 Hb_000866_090 0.1820192262 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
12 Hb_000062_590 0.1840018871 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_127886_010 0.1847132622 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
14 Hb_011716_050 0.1849102397 - - serine acetyltransferase [Hevea brasiliensis]
15 Hb_001288_070 0.1853158273 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
16 Hb_000645_210 0.1875046363 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X2 [Jatropha curcas]
17 Hb_000111_480 0.1877911335 - - PREDICTED: probable carboxylesterase 17 [Jatropha curcas]
18 Hb_011512_130 0.1891983874 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
19 Hb_002217_220 0.1898711921 - - hypothetical protein POPTR_0010s15930g [Populus trichocarpa]
20 Hb_003327_070 0.1899082912 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]

Gene co-expression network

sample Hb_007676_020 Hb_007676_020 Hb_001114_070 Hb_001114_070 Hb_007676_020--Hb_001114_070 Hb_008066_070 Hb_008066_070 Hb_007676_020--Hb_008066_070 Hb_020805_170 Hb_020805_170 Hb_007676_020--Hb_020805_170 Hb_000084_220 Hb_000084_220 Hb_007676_020--Hb_000084_220 Hb_006573_300 Hb_006573_300 Hb_007676_020--Hb_006573_300 Hb_031862_040 Hb_031862_040 Hb_007676_020--Hb_031862_040 Hb_001114_070--Hb_006573_300 Hb_001114_070--Hb_020805_170 Hb_001114_070--Hb_031862_040 Hb_000853_060 Hb_000853_060 Hb_001114_070--Hb_000853_060 Hb_012098_170 Hb_012098_170 Hb_001114_070--Hb_012098_170 Hb_008066_070--Hb_020805_170 Hb_011512_130 Hb_011512_130 Hb_008066_070--Hb_011512_130 Hb_000140_410 Hb_000140_410 Hb_008066_070--Hb_000140_410 Hb_000905_170 Hb_000905_170 Hb_008066_070--Hb_000905_170 Hb_000856_180 Hb_000856_180 Hb_008066_070--Hb_000856_180 Hb_020805_170--Hb_000140_410 Hb_000022_180 Hb_000022_180 Hb_020805_170--Hb_000022_180 Hb_005147_040 Hb_005147_040 Hb_020805_170--Hb_005147_040 Hb_020805_170--Hb_000905_170 Hb_128589_010 Hb_128589_010 Hb_000084_220--Hb_128589_010 Hb_002471_140 Hb_002471_140 Hb_000084_220--Hb_002471_140 Hb_000205_250 Hb_000205_250 Hb_000084_220--Hb_000205_250 Hb_000805_190 Hb_000805_190 Hb_000084_220--Hb_000805_190 Hb_009646_010 Hb_009646_010 Hb_000084_220--Hb_009646_010 Hb_000009_140 Hb_000009_140 Hb_000084_220--Hb_000009_140 Hb_006573_300--Hb_000853_060 Hb_006453_010 Hb_006453_010 Hb_006573_300--Hb_006453_010 Hb_004195_090 Hb_004195_090 Hb_006573_300--Hb_004195_090 Hb_006573_300--Hb_020805_170 Hb_031862_040--Hb_008066_070 Hb_001049_020 Hb_001049_020 Hb_031862_040--Hb_001049_020 Hb_005433_060 Hb_005433_060 Hb_031862_040--Hb_005433_060 Hb_001621_070 Hb_001621_070 Hb_031862_040--Hb_001621_070 Hb_001433_180 Hb_001433_180 Hb_031862_040--Hb_001433_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.224815 2.89421 0.840798 1.05904 0.230493 0.258965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.392041 0.576457 0.873726 2.72323 0.156686

CAGE analysis