Hb_009545_020

Information

Type -
Description -
Location Contig9545: 16612-19728
Sequence    

Annotation

kegg
ID rcu:RCOM_0911830
description hypothetical protein
nr
ID XP_012069658.1
description PREDICTED: uncharacterized protein LOC105632008 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L7Z5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02192 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63494: 16844-19667
cDNA
(Sanger)
(ID:Location)		 009_A17.ab1: 17430-18242

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009545_020 0.0 - - PREDICTED: uncharacterized protein LOC105632008 [Jatropha curcas]
2 Hb_031527_060 0.1017063897 - - glutamate decarboxylase, putative [Ricinus communis]
3 Hb_009736_010 0.1367163106 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003120_040 0.1653114231 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
5 Hb_124315_030 0.1885373619 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
6 Hb_000853_060 0.1919144989 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
7 Hb_004965_060 0.1958547023 - - PREDICTED: LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Jatropha curcas]
8 Hb_000300_130 0.198249223 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
9 Hb_011114_030 0.2045866591 - - PREDICTED: probable carboxylesterase 15 [Jatropha curcas]
10 Hb_000645_210 0.2179027035 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X2 [Jatropha curcas]
11 Hb_032631_050 0.223769058 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
12 Hb_004195_090 0.2239305789 - - PREDICTED: probable mitochondrial chaperone bcs1 [Jatropha curcas]
13 Hb_000928_040 0.2241644285 - - cytochrome P450, putative [Ricinus communis]
14 Hb_003592_030 0.2284295905 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
15 Hb_006573_300 0.2295320498 - - ATP binding protein, putative [Ricinus communis]
16 Hb_007919_040 0.2309760731 - - PREDICTED: protein LYK5 [Jatropha curcas]
17 Hb_000367_310 0.2325383036 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
18 Hb_074506_010 0.2351207839 - - JHL25H03.10 [Jatropha curcas]
19 Hb_000868_100 0.2360704562 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Jatropha curcas]
20 Hb_000671_170 0.2362300459 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_009545_020 Hb_009545_020 Hb_031527_060 Hb_031527_060 Hb_009545_020--Hb_031527_060 Hb_009736_010 Hb_009736_010 Hb_009545_020--Hb_009736_010 Hb_003120_040 Hb_003120_040 Hb_009545_020--Hb_003120_040 Hb_124315_030 Hb_124315_030 Hb_009545_020--Hb_124315_030 Hb_000853_060 Hb_000853_060 Hb_009545_020--Hb_000853_060 Hb_004965_060 Hb_004965_060 Hb_009545_020--Hb_004965_060 Hb_000645_210 Hb_000645_210 Hb_031527_060--Hb_000645_210 Hb_031527_060--Hb_009736_010 Hb_000928_040 Hb_000928_040 Hb_031527_060--Hb_000928_040 Hb_000300_130 Hb_000300_130 Hb_031527_060--Hb_000300_130 Hb_031527_060--Hb_003120_040 Hb_004195_090 Hb_004195_090 Hb_009736_010--Hb_004195_090 Hb_001170_010 Hb_001170_010 Hb_009736_010--Hb_001170_010 Hb_004724_450 Hb_004724_450 Hb_009736_010--Hb_004724_450 Hb_009736_010--Hb_124315_030 Hb_003120_040--Hb_000853_060 Hb_003120_040--Hb_124315_030 Hb_000963_200 Hb_000963_200 Hb_003120_040--Hb_000963_200 Hb_007849_010 Hb_007849_010 Hb_003120_040--Hb_007849_010 Hb_006573_300 Hb_006573_300 Hb_003120_040--Hb_006573_300 Hb_001113_030 Hb_001113_030 Hb_124315_030--Hb_001113_030 Hb_052764_080 Hb_052764_080 Hb_124315_030--Hb_052764_080 Hb_000608_020 Hb_000608_020 Hb_124315_030--Hb_000608_020 Hb_011716_050 Hb_011716_050 Hb_124315_030--Hb_011716_050 Hb_000165_210 Hb_000165_210 Hb_000853_060--Hb_000165_210 Hb_007919_040 Hb_007919_040 Hb_000853_060--Hb_007919_040 Hb_000853_060--Hb_006573_300 Hb_001114_070 Hb_001114_070 Hb_000853_060--Hb_001114_070 Hb_029584_090 Hb_029584_090 Hb_000853_060--Hb_029584_090 Hb_011114_030 Hb_011114_030 Hb_004965_060--Hb_011114_030 Hb_000067_030 Hb_000067_030 Hb_004965_060--Hb_000067_030 Hb_067034_030 Hb_067034_030 Hb_004965_060--Hb_067034_030 Hb_003142_090 Hb_003142_090 Hb_004965_060--Hb_003142_090 Hb_004965_060--Hb_003120_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.50357 71.138 7.88852 37.1514 0.567376 0.366292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.5095 42.8224 8.24806 104.125 13.3532

CAGE analysis