Hb_003120_040

Information

Type -
Description -
Location Contig3120: 14329-18291
Sequence    

Annotation

kegg
ID rcu:RCOM_1598620
description hypothetical protein
nr
ID XP_012073886.1
description PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
swissprot
ID Q8H1D6
description Receptor-like cytosolic serine/threonine-protein kinase RBK1 OS=Arabidopsis thaliana GN=RBK1 PE=1 SV=1
trembl
ID E6NTZ7
description JHL20J20.14 protein OS=Jatropha curcas GN=JHL20J20.14 PE=4 SV=1
Gene Ontology
ID GO:0004672
description kinase protein with adenine nucleotide alpha hydrolases-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32996: 14833-15822 , PASA_asmbl_32997: 16529-17317
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003120_040 0.0 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
2 Hb_000853_060 0.1517449207 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
3 Hb_124315_030 0.1622139439 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
4 Hb_009545_020 0.1653114231 - - PREDICTED: uncharacterized protein LOC105632008 [Jatropha curcas]
5 Hb_000963_200 0.1855721989 - - beta-galactosidase, putative [Ricinus communis]
6 Hb_007849_010 0.1873404374 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
7 Hb_006573_300 0.1893320903 - - ATP binding protein, putative [Ricinus communis]
8 Hb_029584_090 0.1933125489 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
9 Hb_011716_050 0.1960629793 - - serine acetyltransferase [Hevea brasiliensis]
10 Hb_003845_020 0.1960822285 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000421_270 0.1976373919 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
12 Hb_031527_060 0.2019031818 - - glutamate decarboxylase, putative [Ricinus communis]
13 Hb_114684_010 0.2046092187 - - PREDICTED: seed maturation protein PM36 [Jatropha curcas]
14 Hb_009736_010 0.2048249169 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001114_070 0.2067002295 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g58400 [Jatropha curcas]
16 Hb_002686_120 0.2116856498 - - short-chain type dehydrogenase, putative [Ricinus communis]
17 Hb_032631_050 0.2144743995 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
18 Hb_000084_220 0.2170806379 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
19 Hb_089032_010 0.2176971661 - - PREDICTED: flotillin-like protein 3 [Jatropha curcas]
20 Hb_012098_170 0.2178590888 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_16874 [Jatropha curcas]

Gene co-expression network

sample Hb_003120_040 Hb_003120_040 Hb_000853_060 Hb_000853_060 Hb_003120_040--Hb_000853_060 Hb_124315_030 Hb_124315_030 Hb_003120_040--Hb_124315_030 Hb_009545_020 Hb_009545_020 Hb_003120_040--Hb_009545_020 Hb_000963_200 Hb_000963_200 Hb_003120_040--Hb_000963_200 Hb_007849_010 Hb_007849_010 Hb_003120_040--Hb_007849_010 Hb_006573_300 Hb_006573_300 Hb_003120_040--Hb_006573_300 Hb_000165_210 Hb_000165_210 Hb_000853_060--Hb_000165_210 Hb_007919_040 Hb_007919_040 Hb_000853_060--Hb_007919_040 Hb_000853_060--Hb_006573_300 Hb_001114_070 Hb_001114_070 Hb_000853_060--Hb_001114_070 Hb_029584_090 Hb_029584_090 Hb_000853_060--Hb_029584_090 Hb_001113_030 Hb_001113_030 Hb_124315_030--Hb_001113_030 Hb_052764_080 Hb_052764_080 Hb_124315_030--Hb_052764_080 Hb_000608_020 Hb_000608_020 Hb_124315_030--Hb_000608_020 Hb_011716_050 Hb_011716_050 Hb_124315_030--Hb_011716_050 Hb_124315_030--Hb_009545_020 Hb_031527_060 Hb_031527_060 Hb_009545_020--Hb_031527_060 Hb_009736_010 Hb_009736_010 Hb_009545_020--Hb_009736_010 Hb_009545_020--Hb_000853_060 Hb_004965_060 Hb_004965_060 Hb_009545_020--Hb_004965_060 Hb_000034_030 Hb_000034_030 Hb_000963_200--Hb_000034_030 Hb_000963_200--Hb_029584_090 Hb_006594_060 Hb_006594_060 Hb_000963_200--Hb_006594_060 Hb_032631_050 Hb_032631_050 Hb_000963_200--Hb_032631_050 Hb_003453_030 Hb_003453_030 Hb_000963_200--Hb_003453_030 Hb_011200_020 Hb_011200_020 Hb_000963_200--Hb_011200_020 Hb_000007_430 Hb_000007_430 Hb_007849_010--Hb_000007_430 Hb_000984_260 Hb_000984_260 Hb_007849_010--Hb_000984_260 Hb_002918_130 Hb_002918_130 Hb_007849_010--Hb_002918_130 Hb_001675_030 Hb_001675_030 Hb_007849_010--Hb_001675_030 Hb_000599_310 Hb_000599_310 Hb_007849_010--Hb_000599_310 Hb_006573_300--Hb_001114_070 Hb_006453_010 Hb_006453_010 Hb_006573_300--Hb_006453_010 Hb_007676_020 Hb_007676_020 Hb_006573_300--Hb_007676_020 Hb_004195_090 Hb_004195_090 Hb_006573_300--Hb_004195_090 Hb_020805_170 Hb_020805_170 Hb_006573_300--Hb_020805_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0365005 2.84479 0.877605 0.97024 0.0129125 0.0418902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.635075 1.24938 0.227464 3.39876 0.507377

CAGE analysis