Hb_001675_030

Information

Type -
Description -
Location Contig1675: 29007-30868
Sequence    

Annotation

kegg
ID rcu:RCOM_1494300
description hypothetical protein
nr
ID XP_002516036.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQL7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1494300 PE=4 SV=1
Gene Ontology
ID GO:0016021
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001675_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_172632_050 0.1489881448 - - PREDICTED: uncharacterized protein LOC105646134 [Jatropha curcas]
3 Hb_003687_030 0.1640556239 - - protein phosphatase 2c, putative [Ricinus communis]
4 Hb_000529_280 0.1641386576 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
5 Hb_012807_130 0.1744779314 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
6 Hb_028707_070 0.1835840095 - - short-chain dehydrogenase, putative [Ricinus communis]
7 Hb_001728_020 0.1837800859 - - PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Jatropha curcas]
8 Hb_000886_030 0.188744868 - - PREDICTED: uncharacterized protein LOC105113410 [Populus euphratica]
9 Hb_000270_740 0.188896237 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
10 Hb_001199_040 0.1918299188 - - unnamed protein product [Coffea canephora]
11 Hb_000694_060 0.1949010048 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
12 Hb_000645_200 0.1992562171 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
13 Hb_000139_470 0.1993680862 - - Dual specificity protein phosphatase, putative [Ricinus communis]
14 Hb_002660_120 0.2046366306 - - PREDICTED: putative serine/threonine-protein kinase [Populus euphratica]
15 Hb_000979_110 0.2057203564 - - PREDICTED: GPI mannosyltransferase 2 [Jatropha curcas]
16 Hb_000732_190 0.2067639501 - - structural molecule, putative [Ricinus communis]
17 Hb_001433_110 0.207310231 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
18 Hb_006060_020 0.208403135 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
19 Hb_002835_340 0.2086974917 - - PREDICTED: peroxisomal primary amine oxidase [Jatropha curcas]
20 Hb_002374_380 0.21093084 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001675_030 Hb_001675_030 Hb_172632_050 Hb_172632_050 Hb_001675_030--Hb_172632_050 Hb_003687_030 Hb_003687_030 Hb_001675_030--Hb_003687_030 Hb_000529_280 Hb_000529_280 Hb_001675_030--Hb_000529_280 Hb_012807_130 Hb_012807_130 Hb_001675_030--Hb_012807_130 Hb_028707_070 Hb_028707_070 Hb_001675_030--Hb_028707_070 Hb_001728_020 Hb_001728_020 Hb_001675_030--Hb_001728_020 Hb_172632_050--Hb_001728_020 Hb_006060_020 Hb_006060_020 Hb_172632_050--Hb_006060_020 Hb_006643_020 Hb_006643_020 Hb_172632_050--Hb_006643_020 Hb_172632_050--Hb_000529_280 Hb_004449_180 Hb_004449_180 Hb_172632_050--Hb_004449_180 Hb_000139_470 Hb_000139_470 Hb_172632_050--Hb_000139_470 Hb_000886_030 Hb_000886_030 Hb_003687_030--Hb_000886_030 Hb_003687_030--Hb_001728_020 Hb_003687_030--Hb_172632_050 Hb_003687_030--Hb_028707_070 Hb_003687_030--Hb_000529_280 Hb_000529_280--Hb_001728_020 Hb_000723_230 Hb_000723_230 Hb_000529_280--Hb_000723_230 Hb_000645_200 Hb_000645_200 Hb_000529_280--Hb_000645_200 Hb_000529_280--Hb_000139_470 Hb_093458_010 Hb_093458_010 Hb_000529_280--Hb_093458_010 Hb_000007_200 Hb_000007_200 Hb_012807_130--Hb_000007_200 Hb_007590_090 Hb_007590_090 Hb_012807_130--Hb_007590_090 Hb_004007_110 Hb_004007_110 Hb_012807_130--Hb_004007_110 Hb_000648_050 Hb_000648_050 Hb_012807_130--Hb_000648_050 Hb_001998_200 Hb_001998_200 Hb_012807_130--Hb_001998_200 Hb_012807_130--Hb_000645_200 Hb_000979_110 Hb_000979_110 Hb_028707_070--Hb_000979_110 Hb_001153_180 Hb_001153_180 Hb_028707_070--Hb_001153_180 Hb_006816_480 Hb_006816_480 Hb_028707_070--Hb_006816_480 Hb_004453_080 Hb_004453_080 Hb_028707_070--Hb_004453_080 Hb_012725_120 Hb_012725_120 Hb_028707_070--Hb_012725_120 Hb_000699_230 Hb_000699_230 Hb_028707_070--Hb_000699_230 Hb_001728_020--Hb_006060_020 Hb_026198_010 Hb_026198_010 Hb_001728_020--Hb_026198_010 Hb_000732_190 Hb_000732_190 Hb_001728_020--Hb_000732_190 Hb_002686_150 Hb_002686_150 Hb_001728_020--Hb_002686_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.114557 0.684106 0.428872 0.810357 0 0.0540082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.568207 0.89388 0.191235 0.70323 0.14179

CAGE analysis