Hb_006816_480

Information

Type -
Description -
Location Contig6816: 298600-309210
Sequence    

Annotation

kegg
ID rcu:RCOM_1433980
description ubiquitin-protein ligase, putative
nr
ID XP_012088967.1
description PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
swissprot
ID Q8RWU5
description F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana GN=FBL3 PE=2 SV=1
trembl
ID A0A067JV68
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23272 PE=4 SV=1
Gene Ontology
ID GO:0016874
description f-box family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53857: 300428-308997 , PASA_asmbl_53858: 300428-308997
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_480 0.0 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
2 Hb_004837_150 0.0807184883 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
3 Hb_000331_510 0.1110704708 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
4 Hb_000110_300 0.1122442708 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
5 Hb_001956_060 0.1150195143 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
6 Hb_001123_150 0.1190003893 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
7 Hb_002046_060 0.1206786478 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
8 Hb_000711_010 0.1230397256 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
9 Hb_128589_010 0.1241553117 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
10 Hb_000666_010 0.1252355534 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001571_060 0.1260716661 - - PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
12 Hb_002217_090 0.1289033398 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
13 Hb_002349_030 0.1303838341 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000012_240 0.1319064093 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
15 Hb_001699_170 0.132050169 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000340_290 0.1328159205 - - PREDICTED: piezo-type mechanosensitive ion channel homolog [Jatropha curcas]
17 Hb_002915_060 0.1368174852 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
18 Hb_005016_010 0.1385647233 - - AMP dependent CoA ligase, putative [Ricinus communis]
19 Hb_000625_090 0.1395210656 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002151_100 0.1405042303 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]

Gene co-expression network

sample Hb_006816_480 Hb_006816_480 Hb_004837_150 Hb_004837_150 Hb_006816_480--Hb_004837_150 Hb_000331_510 Hb_000331_510 Hb_006816_480--Hb_000331_510 Hb_000110_300 Hb_000110_300 Hb_006816_480--Hb_000110_300 Hb_001956_060 Hb_001956_060 Hb_006816_480--Hb_001956_060 Hb_001123_150 Hb_001123_150 Hb_006816_480--Hb_001123_150 Hb_002046_060 Hb_002046_060 Hb_006816_480--Hb_002046_060 Hb_002217_090 Hb_002217_090 Hb_004837_150--Hb_002217_090 Hb_001699_170 Hb_001699_170 Hb_004837_150--Hb_001699_170 Hb_004837_150--Hb_000110_300 Hb_004837_150--Hb_002046_060 Hb_004837_150--Hb_001123_150 Hb_001571_060 Hb_001571_060 Hb_000331_510--Hb_001571_060 Hb_000205_250 Hb_000205_250 Hb_000331_510--Hb_000205_250 Hb_000345_320 Hb_000345_320 Hb_000331_510--Hb_000345_320 Hb_000666_010 Hb_000666_010 Hb_000331_510--Hb_000666_010 Hb_000227_330 Hb_000227_330 Hb_000331_510--Hb_000227_330 Hb_003747_210 Hb_003747_210 Hb_000110_300--Hb_003747_210 Hb_000110_300--Hb_002217_090 Hb_002915_060 Hb_002915_060 Hb_000110_300--Hb_002915_060 Hb_000110_300--Hb_001956_060 Hb_000012_240 Hb_000012_240 Hb_000110_300--Hb_000012_240 Hb_009646_010 Hb_009646_010 Hb_000110_300--Hb_009646_010 Hb_001956_060--Hb_000666_010 Hb_001956_060--Hb_000012_240 Hb_000711_010 Hb_000711_010 Hb_001956_060--Hb_000711_010 Hb_128589_010 Hb_128589_010 Hb_001956_060--Hb_128589_010 Hb_003581_130 Hb_003581_130 Hb_001956_060--Hb_003581_130 Hb_000656_150 Hb_000656_150 Hb_001123_150--Hb_000656_150 Hb_001123_150--Hb_002046_060 Hb_001123_150--Hb_000110_300 Hb_000540_100 Hb_000540_100 Hb_001123_150--Hb_000540_100 Hb_002046_060--Hb_001699_170 Hb_002349_030 Hb_002349_030 Hb_002046_060--Hb_002349_030 Hb_000912_100 Hb_000912_100 Hb_002046_060--Hb_000912_100 Hb_006469_070 Hb_006469_070 Hb_002046_060--Hb_006469_070 Hb_003975_010 Hb_003975_010 Hb_002046_060--Hb_003975_010 Hb_002046_060--Hb_000012_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.287523 2.41739 1.10915 2.23017 0.22202 0.200443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.06355 0.991841 0.678026 1.79223 1.93891

CAGE analysis