Hb_000331_510

Information

Type -
Description -
Location Contig331: 418992-421096
Sequence    

Annotation

kegg
ID rcu:RCOM_1507440
description ubiquitin-protein ligase, putative
nr
ID XP_012079916.1
description PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
swissprot
ID Q5ZM74
description RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1
trembl
ID A0A067K427
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11357 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ring-h2 finger protein atl47-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34809: 420554-421037
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_510 0.0 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
2 Hb_006816_480 0.1110704708 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
3 Hb_001571_060 0.1111429033 - - PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
4 Hb_000205_250 0.1136368933 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
5 Hb_000345_320 0.1163210992 transcription factor TF Family: MYB-related PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Jatropha curcas]
6 Hb_000666_010 0.1177737037 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000227_330 0.1189065588 - - Acyl-CoA synthetase [Ricinus communis]
8 Hb_006501_160 0.1218155408 - - PREDICTED: hexokinase-1-like [Jatropha curcas]
9 Hb_012325_010 0.1220109418 - - hypothetical protein RCOM_0068670 [Ricinus communis]
10 Hb_005015_110 0.1239280047 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]
11 Hb_001956_060 0.1239561357 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
12 Hb_011674_040 0.129084578 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
13 Hb_003680_020 0.1301578829 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_000960_080 0.1303052839 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
15 Hb_128589_010 0.1305229763 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
16 Hb_002151_100 0.131421537 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
17 Hb_000535_050 0.1320646493 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
18 Hb_028960_030 0.1325323283 - - Short-chain dehydrogenase-reductase B [Theobroma cacao]
19 Hb_001900_100 0.1327203108 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
20 Hb_006916_110 0.1340371254 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_510 Hb_000331_510 Hb_006816_480 Hb_006816_480 Hb_000331_510--Hb_006816_480 Hb_001571_060 Hb_001571_060 Hb_000331_510--Hb_001571_060 Hb_000205_250 Hb_000205_250 Hb_000331_510--Hb_000205_250 Hb_000345_320 Hb_000345_320 Hb_000331_510--Hb_000345_320 Hb_000666_010 Hb_000666_010 Hb_000331_510--Hb_000666_010 Hb_000227_330 Hb_000227_330 Hb_000331_510--Hb_000227_330 Hb_004837_150 Hb_004837_150 Hb_006816_480--Hb_004837_150 Hb_000110_300 Hb_000110_300 Hb_006816_480--Hb_000110_300 Hb_001956_060 Hb_001956_060 Hb_006816_480--Hb_001956_060 Hb_001123_150 Hb_001123_150 Hb_006816_480--Hb_001123_150 Hb_002046_060 Hb_002046_060 Hb_006816_480--Hb_002046_060 Hb_005015_110 Hb_005015_110 Hb_001571_060--Hb_005015_110 Hb_180378_010 Hb_180378_010 Hb_001571_060--Hb_180378_010 Hb_004218_180 Hb_004218_180 Hb_001571_060--Hb_004218_180 Hb_001571_060--Hb_000666_010 Hb_002486_080 Hb_002486_080 Hb_001571_060--Hb_002486_080 Hb_000535_050 Hb_000535_050 Hb_001571_060--Hb_000535_050 Hb_002235_310 Hb_002235_310 Hb_000205_250--Hb_002235_310 Hb_000866_110 Hb_000866_110 Hb_000205_250--Hb_000866_110 Hb_000271_120 Hb_000271_120 Hb_000205_250--Hb_000271_120 Hb_011925_020 Hb_011925_020 Hb_000205_250--Hb_011925_020 Hb_000125_180 Hb_000125_180 Hb_000205_250--Hb_000125_180 Hb_000205_250--Hb_001956_060 Hb_002276_040 Hb_002276_040 Hb_000345_320--Hb_002276_040 Hb_082741_010 Hb_082741_010 Hb_000345_320--Hb_082741_010 Hb_000209_100 Hb_000209_100 Hb_000345_320--Hb_000209_100 Hb_006916_110 Hb_006916_110 Hb_000345_320--Hb_006916_110 Hb_010872_050 Hb_010872_050 Hb_000345_320--Hb_010872_050 Hb_000144_120 Hb_000144_120 Hb_000345_320--Hb_000144_120 Hb_000666_010--Hb_000535_050 Hb_000666_010--Hb_001956_060 Hb_007904_300 Hb_007904_300 Hb_000666_010--Hb_007904_300 Hb_000510_170 Hb_000510_170 Hb_000666_010--Hb_000510_170 Hb_001811_170 Hb_001811_170 Hb_000666_010--Hb_001811_170 Hb_000012_240 Hb_000012_240 Hb_000666_010--Hb_000012_240 Hb_012325_010 Hb_012325_010 Hb_000227_330--Hb_012325_010 Hb_053575_020 Hb_053575_020 Hb_000227_330--Hb_053575_020 Hb_000227_330--Hb_000125_180 Hb_000317_350 Hb_000317_350 Hb_000227_330--Hb_000317_350 Hb_000227_330--Hb_000205_250 Hb_000227_330--Hb_000271_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.497818 4.10489 2.64116 2.81424 0.525713 0.858012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.03896 1.43319 0.886077 4.31055 3.23806

CAGE analysis