Hb_001123_150

Information

Type transcription factor
Description TF Family: NAC
Location Contig1123: 106172-107822
Sequence    

Annotation

kegg
ID rcu:RCOM_1437600
description NAC domain-containing protein, putative
nr
ID AHF27223.1
description NAC transcription factor [Hevea brasiliensis]
swissprot
ID Q8GY42
description NAC transcription factor 25 OS=Arabidopsis thaliana GN=NAC025 PE=2 SV=1
trembl
ID A0A059SWR9
description NAC transcription factor OS=Hevea brasiliensis GN=NAC2 PE=2 SV=1
Gene Ontology
ID GO:0003677
description no apical meristem family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03741: 106177-107868
cDNA
(Sanger)
(ID:Location)		 023_C06.ab1: 106403-107184 , 029_F06.ab1: 106403-107220 , 030_D18.ab1: 106403-107417

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_150 0.0 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
2 Hb_006816_480 0.1190003893 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
3 Hb_000656_150 0.1338261289 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
4 Hb_004837_150 0.1387053953 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
5 Hb_002046_060 0.1410506824 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
6 Hb_000110_300 0.1447341479 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
7 Hb_000540_100 0.1466276756 - - PREDICTED: BTB/POZ domain-containing protein At5g60050 [Jatropha curcas]
8 Hb_000340_290 0.1505534304 - - PREDICTED: piezo-type mechanosensitive ion channel homolog [Jatropha curcas]
9 Hb_000809_250 0.151090367 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
10 Hb_003581_130 0.1527130209 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
11 Hb_001998_150 0.15284781 - - hypothetical protein JCGZ_09140 [Jatropha curcas]
12 Hb_000302_200 0.154631661 - - ornithine cyclodeaminase, putative [Ricinus communis]
13 Hb_003680_020 0.1555674145 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_001699_170 0.1565054492 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006210_010 0.1568761778 - - PREDICTED: probable acyl-activating enzyme 17, peroxisomal isoform X2 [Jatropha curcas]
16 Hb_128589_010 0.1574584257 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
17 Hb_001811_170 0.1578198557 - - dynamin, putative [Ricinus communis]
18 Hb_000601_040 0.1580355327 - - PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
19 Hb_031089_050 0.1588277709 - - kinase, putative [Ricinus communis]
20 Hb_002349_030 0.1593247971 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001123_150 Hb_001123_150 Hb_006816_480 Hb_006816_480 Hb_001123_150--Hb_006816_480 Hb_000656_150 Hb_000656_150 Hb_001123_150--Hb_000656_150 Hb_004837_150 Hb_004837_150 Hb_001123_150--Hb_004837_150 Hb_002046_060 Hb_002046_060 Hb_001123_150--Hb_002046_060 Hb_000110_300 Hb_000110_300 Hb_001123_150--Hb_000110_300 Hb_000540_100 Hb_000540_100 Hb_001123_150--Hb_000540_100 Hb_006816_480--Hb_004837_150 Hb_000331_510 Hb_000331_510 Hb_006816_480--Hb_000331_510 Hb_006816_480--Hb_000110_300 Hb_001956_060 Hb_001956_060 Hb_006816_480--Hb_001956_060 Hb_006816_480--Hb_002046_060 Hb_005215_020 Hb_005215_020 Hb_000656_150--Hb_005215_020 Hb_002995_040 Hb_002995_040 Hb_000656_150--Hb_002995_040 Hb_001673_060 Hb_001673_060 Hb_000656_150--Hb_001673_060 Hb_000340_080 Hb_000340_080 Hb_000656_150--Hb_000340_080 Hb_000085_450 Hb_000085_450 Hb_000656_150--Hb_000085_450 Hb_004125_130 Hb_004125_130 Hb_000656_150--Hb_004125_130 Hb_002217_090 Hb_002217_090 Hb_004837_150--Hb_002217_090 Hb_001699_170 Hb_001699_170 Hb_004837_150--Hb_001699_170 Hb_004837_150--Hb_000110_300 Hb_004837_150--Hb_002046_060 Hb_002046_060--Hb_001699_170 Hb_002349_030 Hb_002349_030 Hb_002046_060--Hb_002349_030 Hb_000912_100 Hb_000912_100 Hb_002046_060--Hb_000912_100 Hb_006469_070 Hb_006469_070 Hb_002046_060--Hb_006469_070 Hb_003975_010 Hb_003975_010 Hb_002046_060--Hb_003975_010 Hb_000012_240 Hb_000012_240 Hb_002046_060--Hb_000012_240 Hb_003747_210 Hb_003747_210 Hb_000110_300--Hb_003747_210 Hb_000110_300--Hb_002217_090 Hb_002915_060 Hb_002915_060 Hb_000110_300--Hb_002915_060 Hb_000110_300--Hb_001956_060 Hb_000110_300--Hb_000012_240 Hb_009646_010 Hb_009646_010 Hb_000110_300--Hb_009646_010 Hb_001366_270 Hb_001366_270 Hb_000540_100--Hb_001366_270 Hb_004030_060 Hb_004030_060 Hb_000540_100--Hb_004030_060 Hb_002311_130 Hb_002311_130 Hb_000540_100--Hb_002311_130 Hb_001702_050 Hb_001702_050 Hb_000540_100--Hb_001702_050 Hb_001235_130 Hb_001235_130 Hb_000540_100--Hb_001235_130 Hb_001811_170 Hb_001811_170 Hb_000540_100--Hb_001811_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.1787 45.4877 13.6126 47.9128 4.57115 4.49734
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1197 11.7566 11.1835 34.0952 41.2513

CAGE analysis