Hb_004837_150

Information

Type -
Description -
Location Contig4837: 149380-151424
Sequence    

Annotation

kegg
ID pop:POPTR_0001s26540g
description POPTRDRAFT_172929; hypothetical protein
nr
ID XP_002298402.2
description hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GF05
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s26540g PE=4 SV=2
Gene Ontology
ID GO:0009570
description chaperonin-like protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004837_150 0.0 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
2 Hb_006816_480 0.0807184883 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
3 Hb_002217_090 0.1135822247 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
4 Hb_001699_170 0.1346850131 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000110_300 0.1357202138 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
6 Hb_002046_060 0.1364333852 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
7 Hb_001123_150 0.1387053953 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
8 Hb_000711_010 0.1415697489 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
9 Hb_004128_030 0.1415972776 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 8-like isoform X1 [Jatropha curcas]
10 Hb_000416_060 0.1490499247 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
11 Hb_001699_230 0.1506473575 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
12 Hb_023344_110 0.1558591556 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
13 Hb_001500_030 0.1562115788 - - PREDICTED: uncharacterized protein At2g33490 isoform X2 [Jatropha curcas]
14 Hb_001956_060 0.1567888831 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
15 Hb_003747_210 0.1582226146 - - PREDICTED: uncharacterized protein LOC105630240 [Jatropha curcas]
16 Hb_000331_510 0.1594786815 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
17 Hb_000340_290 0.1604633673 - - PREDICTED: piezo-type mechanosensitive ion channel homolog [Jatropha curcas]
18 Hb_002349_030 0.1607256322 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002774_200 0.1610394877 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
20 Hb_000684_050 0.1628609021 - - PREDICTED: MLO-like protein 6 [Sesamum indicum]

Gene co-expression network

sample Hb_004837_150 Hb_004837_150 Hb_006816_480 Hb_006816_480 Hb_004837_150--Hb_006816_480 Hb_002217_090 Hb_002217_090 Hb_004837_150--Hb_002217_090 Hb_001699_170 Hb_001699_170 Hb_004837_150--Hb_001699_170 Hb_000110_300 Hb_000110_300 Hb_004837_150--Hb_000110_300 Hb_002046_060 Hb_002046_060 Hb_004837_150--Hb_002046_060 Hb_001123_150 Hb_001123_150 Hb_004837_150--Hb_001123_150 Hb_000331_510 Hb_000331_510 Hb_006816_480--Hb_000331_510 Hb_006816_480--Hb_000110_300 Hb_001956_060 Hb_001956_060 Hb_006816_480--Hb_001956_060 Hb_006816_480--Hb_001123_150 Hb_006816_480--Hb_002046_060 Hb_001500_030 Hb_001500_030 Hb_002217_090--Hb_001500_030 Hb_004128_030 Hb_004128_030 Hb_002217_090--Hb_004128_030 Hb_000912_100 Hb_000912_100 Hb_002217_090--Hb_000912_100 Hb_003747_210 Hb_003747_210 Hb_002217_090--Hb_003747_210 Hb_000711_010 Hb_000711_010 Hb_002217_090--Hb_000711_010 Hb_002876_210 Hb_002876_210 Hb_002217_090--Hb_002876_210 Hb_001699_170--Hb_002046_060 Hb_000416_060 Hb_000416_060 Hb_001699_170--Hb_000416_060 Hb_031089_050 Hb_031089_050 Hb_001699_170--Hb_031089_050 Hb_005588_120 Hb_005588_120 Hb_001699_170--Hb_005588_120 Hb_003581_130 Hb_003581_130 Hb_001699_170--Hb_003581_130 Hb_004030_060 Hb_004030_060 Hb_001699_170--Hb_004030_060 Hb_000110_300--Hb_003747_210 Hb_000110_300--Hb_002217_090 Hb_002915_060 Hb_002915_060 Hb_000110_300--Hb_002915_060 Hb_000110_300--Hb_001956_060 Hb_000012_240 Hb_000012_240 Hb_000110_300--Hb_000012_240 Hb_009646_010 Hb_009646_010 Hb_000110_300--Hb_009646_010 Hb_002349_030 Hb_002349_030 Hb_002046_060--Hb_002349_030 Hb_002046_060--Hb_000912_100 Hb_006469_070 Hb_006469_070 Hb_002046_060--Hb_006469_070 Hb_003975_010 Hb_003975_010 Hb_002046_060--Hb_003975_010 Hb_002046_060--Hb_000012_240 Hb_000656_150 Hb_000656_150 Hb_001123_150--Hb_000656_150 Hb_001123_150--Hb_002046_060 Hb_001123_150--Hb_000110_300 Hb_000540_100 Hb_000540_100 Hb_001123_150--Hb_000540_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.19612 15.3005 4.63865 11.7 0.780436 1.21585
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.17372 4.53701 3.01883 6.24413 9.99808

CAGE analysis