Hb_006469_070

Information

Type -
Description -
Location Contig6469: 92335-94745
Sequence    

Annotation

kegg
ID rcu:RCOM_1033410
description hypothetical protein
nr
ID XP_012078115.1
description PREDICTED: F-box/kelch-repeat protein At1g22040 [Jatropha curcas]
swissprot
ID Q9LM55
description F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana GN=At1g22040 PE=2 SV=1
trembl
ID A0A067K932
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12003 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52347: 92425-93594 , PASA_asmbl_52349: 93815-95180
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006469_070 0.0 - - PREDICTED: F-box/kelch-repeat protein At1g22040 [Jatropha curcas]
2 Hb_002046_060 0.0962762329 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
3 Hb_019280_020 0.1100980536 - - PREDICTED: proline-rich receptor-like protein kinase PERK14 isoform X1 [Jatropha curcas]
4 Hb_000265_140 0.1101657277 - - PREDICTED: transmembrane 9 superfamily member 12 [Jatropha curcas]
5 Hb_004109_050 0.1108499494 - - PREDICTED: putative callose synthase 8 [Jatropha curcas]
6 Hb_021576_070 0.1143910777 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
7 Hb_001754_020 0.117323447 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
8 Hb_001481_150 0.1180120271 - - hypothetical protein POPTR_0001s15440g [Populus trichocarpa]
9 Hb_003975_010 0.1192683009 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
10 Hb_004030_060 0.1208509627 - - receptor protein kinase zmpk1, putative [Ricinus communis]
11 Hb_000540_100 0.1209684507 - - PREDICTED: BTB/POZ domain-containing protein At5g60050 [Jatropha curcas]
12 Hb_000701_030 0.1211351431 - - Sodium/hydrogen exchanger 6 -like protein [Gossypium arboreum]
13 Hb_006683_020 0.1219285944 - - PREDICTED: nucleosome assembly protein 1;4 [Jatropha curcas]
14 Hb_000138_060 0.1245140502 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
15 Hb_000679_100 0.1253765786 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
16 Hb_010042_020 0.1268032459 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]
17 Hb_009252_030 0.1277918269 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
18 Hb_002217_500 0.1286288486 - - hypothetical protein JCGZ_19014 [Jatropha curcas]
19 Hb_000003_310 0.1295804049 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
20 Hb_004987_020 0.1296912986 - - -

Gene co-expression network

sample Hb_006469_070 Hb_006469_070 Hb_002046_060 Hb_002046_060 Hb_006469_070--Hb_002046_060 Hb_019280_020 Hb_019280_020 Hb_006469_070--Hb_019280_020 Hb_000265_140 Hb_000265_140 Hb_006469_070--Hb_000265_140 Hb_004109_050 Hb_004109_050 Hb_006469_070--Hb_004109_050 Hb_021576_070 Hb_021576_070 Hb_006469_070--Hb_021576_070 Hb_001754_020 Hb_001754_020 Hb_006469_070--Hb_001754_020 Hb_001699_170 Hb_001699_170 Hb_002046_060--Hb_001699_170 Hb_002349_030 Hb_002349_030 Hb_002046_060--Hb_002349_030 Hb_000912_100 Hb_000912_100 Hb_002046_060--Hb_000912_100 Hb_003975_010 Hb_003975_010 Hb_002046_060--Hb_003975_010 Hb_000012_240 Hb_000012_240 Hb_002046_060--Hb_000012_240 Hb_012362_030 Hb_012362_030 Hb_019280_020--Hb_012362_030 Hb_001481_150 Hb_001481_150 Hb_019280_020--Hb_001481_150 Hb_000152_710 Hb_000152_710 Hb_019280_020--Hb_000152_710 Hb_029510_100 Hb_029510_100 Hb_019280_020--Hb_029510_100 Hb_033152_070 Hb_033152_070 Hb_019280_020--Hb_033152_070 Hb_004525_040 Hb_004525_040 Hb_019280_020--Hb_004525_040 Hb_000701_030 Hb_000701_030 Hb_000265_140--Hb_000701_030 Hb_002603_040 Hb_002603_040 Hb_000265_140--Hb_002603_040 Hb_012194_060 Hb_012194_060 Hb_000265_140--Hb_012194_060 Hb_000085_260 Hb_000085_260 Hb_000265_140--Hb_000085_260 Hb_000265_140--Hb_001754_020 Hb_000265_140--Hb_021576_070 Hb_004109_050--Hb_021576_070 Hb_004109_050--Hb_000152_710 Hb_004109_050--Hb_001754_020 Hb_001545_130 Hb_001545_130 Hb_004109_050--Hb_001545_130 Hb_000570_020 Hb_000570_020 Hb_004109_050--Hb_000570_020 Hb_000395_110 Hb_000395_110 Hb_004109_050--Hb_000395_110 Hb_021576_070--Hb_000152_710 Hb_021576_070--Hb_000701_030 Hb_001216_110 Hb_001216_110 Hb_021576_070--Hb_001216_110 Hb_000418_020 Hb_000418_020 Hb_021576_070--Hb_000418_020 Hb_021576_070--Hb_001754_020 Hb_001754_020--Hb_003975_010 Hb_001691_040 Hb_001691_040 Hb_001754_020--Hb_001691_040 Hb_010672_020 Hb_010672_020 Hb_001754_020--Hb_010672_020 Hb_002272_240 Hb_002272_240 Hb_001754_020--Hb_002272_240 Hb_116349_120 Hb_116349_120 Hb_001754_020--Hb_116349_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.53601 9.45733 5.23297 20.3083 1.43626 4.12918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.81045 2.21016 4.4152 7.40612 9.37638

CAGE analysis