Hb_172632_050

Information

Type -
Description -
Location Contig172632: 25447-25881
Sequence    

Annotation

kegg
ID pop:POPTR_0010s26060g
description POPTRDRAFT_725226; ribosomal family protein
nr
ID XP_012087304.1
description PREDICTED: uncharacterized protein LOC105646134 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZR2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22574 PE=4 SV=1
Gene Ontology
ID GO:0005840
description ribosomal family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16341: 17488-24646
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172632_050 0.0 - - PREDICTED: uncharacterized protein LOC105646134 [Jatropha curcas]
2 Hb_001728_020 0.1229251381 - - PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Jatropha curcas]
3 Hb_006060_020 0.1291319818 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
4 Hb_006643_020 0.1301521429 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
5 Hb_000529_280 0.131640277 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
6 Hb_004449_180 0.1316623448 - - PREDICTED: SAC3 family protein 1 [Jatropha curcas]
7 Hb_000139_470 0.1410529495 - - Dual specificity protein phosphatase, putative [Ricinus communis]
8 Hb_000983_050 0.1465209776 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_001675_030 0.1489881448 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000645_200 0.1506831549 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
11 Hb_001189_040 0.1528417721 - - hypothetical protein POPTR_0014s10420g [Populus trichocarpa]
12 Hb_002915_060 0.1550843148 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
13 Hb_012807_130 0.1573710293 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
14 Hb_000625_090 0.1582349071 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000889_010 0.1585576541 transcription factor TF Family: MYB-related hypothetical protein PRUPE_ppa014728mg [Prunus persica]
16 Hb_000538_240 0.1585803085 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
17 Hb_000215_320 0.1585860605 - - phosphofructokinase [Hevea brasiliensis]
18 Hb_000975_350 0.1591131206 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
19 Hb_000723_230 0.1599267349 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
20 Hb_000732_190 0.1609155205 - - structural molecule, putative [Ricinus communis]

Gene co-expression network

sample Hb_172632_050 Hb_172632_050 Hb_001728_020 Hb_001728_020 Hb_172632_050--Hb_001728_020 Hb_006060_020 Hb_006060_020 Hb_172632_050--Hb_006060_020 Hb_006643_020 Hb_006643_020 Hb_172632_050--Hb_006643_020 Hb_000529_280 Hb_000529_280 Hb_172632_050--Hb_000529_280 Hb_004449_180 Hb_004449_180 Hb_172632_050--Hb_004449_180 Hb_000139_470 Hb_000139_470 Hb_172632_050--Hb_000139_470 Hb_001728_020--Hb_000529_280 Hb_001728_020--Hb_006060_020 Hb_026198_010 Hb_026198_010 Hb_001728_020--Hb_026198_010 Hb_000732_190 Hb_000732_190 Hb_001728_020--Hb_000732_190 Hb_002686_150 Hb_002686_150 Hb_001728_020--Hb_002686_150 Hb_000723_230 Hb_000723_230 Hb_006060_020--Hb_000723_230 Hb_006060_020--Hb_006643_020 Hb_006637_030 Hb_006637_030 Hb_006060_020--Hb_006637_030 Hb_006060_020--Hb_026198_010 Hb_053709_050 Hb_053709_050 Hb_006060_020--Hb_053709_050 Hb_000555_100 Hb_000555_100 Hb_006060_020--Hb_000555_100 Hb_001396_110 Hb_001396_110 Hb_006643_020--Hb_001396_110 Hb_000215_320 Hb_000215_320 Hb_006643_020--Hb_000215_320 Hb_001911_040 Hb_001911_040 Hb_006643_020--Hb_001911_040 Hb_085972_010 Hb_085972_010 Hb_006643_020--Hb_085972_010 Hb_011360_050 Hb_011360_050 Hb_006643_020--Hb_011360_050 Hb_000529_280--Hb_000723_230 Hb_000645_200 Hb_000645_200 Hb_000529_280--Hb_000645_200 Hb_000529_280--Hb_000139_470 Hb_093458_010 Hb_093458_010 Hb_000529_280--Hb_093458_010 Hb_000179_270 Hb_000179_270 Hb_004449_180--Hb_000179_270 Hb_002272_270 Hb_002272_270 Hb_004449_180--Hb_002272_270 Hb_011344_200 Hb_011344_200 Hb_004449_180--Hb_011344_200 Hb_004449_180--Hb_000555_100 Hb_000889_010 Hb_000889_010 Hb_004449_180--Hb_000889_010 Hb_000087_070 Hb_000087_070 Hb_004449_180--Hb_000087_070 Hb_001728_040 Hb_001728_040 Hb_000139_470--Hb_001728_040 Hb_000847_060 Hb_000847_060 Hb_000139_470--Hb_000847_060 Hb_002301_160 Hb_002301_160 Hb_000139_470--Hb_002301_160 Hb_006538_090 Hb_006538_090 Hb_000139_470--Hb_006538_090 Hb_000155_160 Hb_000155_160 Hb_000139_470--Hb_000155_160 Hb_002239_050 Hb_002239_050 Hb_000139_470--Hb_002239_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.756689 4.07788 2.46478 5.61375 0.579395 0.954085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.728 4.15153 1.09793 2.99879 1.20822

CAGE analysis