Hb_000984_260

Information

Type -
Description -
Location Contig984: 279370-282888
Sequence    

Annotation

kegg
ID pop:POPTR_0002s11330g
description POPTRDRAFT_830270; integral membrane family protein
nr
ID NP_001295645.1
description ergosterol biosynthetic protein 28 [Jatropha curcas]
swissprot
ID O80594
description Ergosterol biosynthetic protein 28 OS=Arabidopsis thaliana GN=At1g10030 PE=2 SV=2
trembl
ID D6BR64
description Putative uncharacterized protein OS=Jatropha curcas PE=2 SV=1
Gene Ontology
ID GO:0016021
description ergosterol biosynthetic protein 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64580: 279409-282485 , PASA_asmbl_64582: 280500-280651
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000984_260 0.0 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
2 Hb_002960_090 0.1346945056 - - protein with unknown function [Ricinus communis]
3 Hb_005701_110 0.1453467494 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
4 Hb_000007_430 0.1625915269 - - hypothetical protein POPTR_0010s14280g [Populus trichocarpa]
5 Hb_006210_020 0.1654980919 - - PREDICTED: calcium sensing receptor, chloroplastic [Jatropha curcas]
6 Hb_019863_030 0.1674642599 - - hypothetical protein JCGZ_00393 [Jatropha curcas]
7 Hb_001728_020 0.1721994847 - - PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Jatropha curcas]
8 Hb_001300_170 0.1747109339 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000732_190 0.1756488053 - - structural molecule, putative [Ricinus communis]
10 Hb_008768_020 0.1760181216 - - PREDICTED: uncharacterized protein LOC105639378 [Jatropha curcas]
11 Hb_003417_030 0.1796804844 - - PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Jatropha curcas]
12 Hb_001221_580 0.1797746077 - - PREDICTED: recQ-mediated genome instability protein 1 [Jatropha curcas]
13 Hb_089140_110 0.1810564834 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
14 Hb_000529_040 0.1833616698 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]
15 Hb_015778_040 0.1868689115 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
16 Hb_101146_010 0.1894663855 - - PREDICTED: peregrin-like [Jatropha curcas]
17 Hb_003670_030 0.1896219236 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
18 Hb_012545_030 0.1912810516 - - Polyadenylate-binding protein RBP47C [Glycine soja]
19 Hb_000375_060 0.1912829229 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
20 Hb_172706_020 0.1916166962 - - PREDICTED: protein ABIL2 [Jatropha curcas]

Gene co-expression network

sample Hb_000984_260 Hb_000984_260 Hb_002960_090 Hb_002960_090 Hb_000984_260--Hb_002960_090 Hb_005701_110 Hb_005701_110 Hb_000984_260--Hb_005701_110 Hb_000007_430 Hb_000007_430 Hb_000984_260--Hb_000007_430 Hb_006210_020 Hb_006210_020 Hb_000984_260--Hb_006210_020 Hb_019863_030 Hb_019863_030 Hb_000984_260--Hb_019863_030 Hb_001728_020 Hb_001728_020 Hb_000984_260--Hb_001728_020 Hb_015778_040 Hb_015778_040 Hb_002960_090--Hb_015778_040 Hb_101146_010 Hb_101146_010 Hb_002960_090--Hb_101146_010 Hb_002627_020 Hb_002627_020 Hb_002960_090--Hb_002627_020 Hb_002960_090--Hb_006210_020 Hb_002960_090--Hb_005701_110 Hb_012545_030 Hb_012545_030 Hb_005701_110--Hb_012545_030 Hb_001155_050 Hb_001155_050 Hb_005701_110--Hb_001155_050 Hb_006120_150 Hb_006120_150 Hb_005701_110--Hb_006120_150 Hb_005701_110--Hb_015778_040 Hb_008768_020 Hb_008768_020 Hb_005701_110--Hb_008768_020 Hb_000007_430--Hb_019863_030 Hb_000005_340 Hb_000005_340 Hb_000007_430--Hb_000005_340 Hb_000175_470 Hb_000175_470 Hb_000007_430--Hb_000175_470 Hb_001922_060 Hb_001922_060 Hb_000007_430--Hb_001922_060 Hb_172706_020 Hb_172706_020 Hb_000007_430--Hb_172706_020 Hb_000098_150 Hb_000098_150 Hb_006210_020--Hb_000098_150 Hb_004108_210 Hb_004108_210 Hb_006210_020--Hb_004108_210 Hb_007741_130 Hb_007741_130 Hb_006210_020--Hb_007741_130 Hb_002194_050 Hb_002194_050 Hb_006210_020--Hb_002194_050 Hb_004117_190 Hb_004117_190 Hb_006210_020--Hb_004117_190 Hb_004586_240 Hb_004586_240 Hb_019863_030--Hb_004586_240 Hb_005504_030 Hb_005504_030 Hb_019863_030--Hb_005504_030 Hb_000139_140 Hb_000139_140 Hb_019863_030--Hb_000139_140 Hb_019863_030--Hb_000005_340 Hb_019863_030--Hb_172706_020 Hb_000529_280 Hb_000529_280 Hb_001728_020--Hb_000529_280 Hb_006060_020 Hb_006060_020 Hb_001728_020--Hb_006060_020 Hb_026198_010 Hb_026198_010 Hb_001728_020--Hb_026198_010 Hb_172632_050 Hb_172632_050 Hb_001728_020--Hb_172632_050 Hb_000732_190 Hb_000732_190 Hb_001728_020--Hb_000732_190 Hb_002686_150 Hb_002686_150 Hb_001728_020--Hb_002686_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.18631 10.5497 15.0877 8.97723 0.430674 0.484365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.87738 7.97241 0.584033 8.55038 3.24028

CAGE analysis