Hb_002627_020

Information

Type -
Description -
Location Contig2627: 63690-69320
Sequence    

Annotation

kegg
ID rcu:RCOM_0549790
description hypothetical protein
nr
ID XP_012080688.1
description PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
swissprot
ID Q9BYX2
description TBC1 domain family member 2A OS=Homo sapiens GN=TBC1D2 PE=1 SV=3
trembl
ID A0A067K403
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13790 PE=4 SV=1
Gene Ontology
ID GO:0030048
description growth hormone-regulated tbc protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27426: 63835-69261 , PASA_asmbl_27428: 68684-68882
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002627_020 0.0 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
2 Hb_002960_090 0.1386565764 - - protein with unknown function [Ricinus communis]
3 Hb_000172_280 0.1393968744 - - aspartate aminotransferase, putative [Ricinus communis]
4 Hb_000175_470 0.149148408 - - lactoylglutathione lyase, putative [Ricinus communis]
5 Hb_027380_190 0.1552568221 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
6 Hb_000310_120 0.1560091026 - - PREDICTED: probable transaldolase [Jatropha curcas]
7 Hb_000648_050 0.1577870592 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
8 Hb_000392_250 0.1578425751 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
9 Hb_010534_020 0.1590257913 - - PREDICTED: protein XRI1 isoform X1 [Jatropha curcas]
10 Hb_000049_200 0.1595104142 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
11 Hb_124677_030 0.1605399001 - - PREDICTED: uncharacterized protein LOC105650473 [Jatropha curcas]
12 Hb_000206_230 0.1623759187 - - conserved hypothetical protein [Ricinus communis]
13 Hb_172706_020 0.1625726383 - - PREDICTED: protein ABIL2 [Jatropha curcas]
14 Hb_002518_090 0.163643036 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
15 Hb_010172_110 0.1643444926 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
16 Hb_001148_090 0.1684866257 - - hypothetical protein JCGZ_14711 [Jatropha curcas]
17 Hb_002486_080 0.1691431437 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
18 Hb_000057_130 0.1718776406 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
19 Hb_000220_110 0.1731175022 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
20 Hb_000889_010 0.1743167264 transcription factor TF Family: MYB-related hypothetical protein PRUPE_ppa014728mg [Prunus persica]

Gene co-expression network

sample Hb_002627_020 Hb_002627_020 Hb_002960_090 Hb_002960_090 Hb_002627_020--Hb_002960_090 Hb_000172_280 Hb_000172_280 Hb_002627_020--Hb_000172_280 Hb_000175_470 Hb_000175_470 Hb_002627_020--Hb_000175_470 Hb_027380_190 Hb_027380_190 Hb_002627_020--Hb_027380_190 Hb_000310_120 Hb_000310_120 Hb_002627_020--Hb_000310_120 Hb_000648_050 Hb_000648_050 Hb_002627_020--Hb_000648_050 Hb_015778_040 Hb_015778_040 Hb_002960_090--Hb_015778_040 Hb_101146_010 Hb_101146_010 Hb_002960_090--Hb_101146_010 Hb_000984_260 Hb_000984_260 Hb_002960_090--Hb_000984_260 Hb_006210_020 Hb_006210_020 Hb_002960_090--Hb_006210_020 Hb_005701_110 Hb_005701_110 Hb_002960_090--Hb_005701_110 Hb_000220_110 Hb_000220_110 Hb_000172_280--Hb_000220_110 Hb_002486_080 Hb_002486_080 Hb_000172_280--Hb_002486_080 Hb_124315_010 Hb_124315_010 Hb_000172_280--Hb_124315_010 Hb_000465_150 Hb_000465_150 Hb_000172_280--Hb_000465_150 Hb_000907_150 Hb_000907_150 Hb_000172_280--Hb_000907_150 Hb_001148_090 Hb_001148_090 Hb_000172_280--Hb_001148_090 Hb_002539_040 Hb_002539_040 Hb_000175_470--Hb_002539_040 Hb_001148_100 Hb_001148_100 Hb_000175_470--Hb_001148_100 Hb_143766_080 Hb_143766_080 Hb_000175_470--Hb_143766_080 Hb_005408_070 Hb_005408_070 Hb_000175_470--Hb_005408_070 Hb_172706_020 Hb_172706_020 Hb_000175_470--Hb_172706_020 Hb_000567_180 Hb_000567_180 Hb_000175_470--Hb_000567_180 Hb_152868_030 Hb_152868_030 Hb_027380_190--Hb_152868_030 Hb_027380_190--Hb_000172_280 Hb_001817_100 Hb_001817_100 Hb_027380_190--Hb_001817_100 Hb_027380_190--Hb_000465_150 Hb_027380_190--Hb_000907_150 Hb_007590_090 Hb_007590_090 Hb_027380_190--Hb_007590_090 Hb_000406_030 Hb_000406_030 Hb_000310_120--Hb_000406_030 Hb_003680_220 Hb_003680_220 Hb_000310_120--Hb_003680_220 Hb_000589_170 Hb_000589_170 Hb_000310_120--Hb_000589_170 Hb_000500_220 Hb_000500_220 Hb_000310_120--Hb_000500_220 Hb_008725_270 Hb_008725_270 Hb_000310_120--Hb_008725_270 Hb_013405_070 Hb_013405_070 Hb_000310_120--Hb_013405_070 Hb_000270_180 Hb_000270_180 Hb_000648_050--Hb_000270_180 Hb_000648_050--Hb_007590_090 Hb_000648_050--Hb_002486_080 Hb_000017_260 Hb_000017_260 Hb_000648_050--Hb_000017_260 Hb_000648_050--Hb_001817_100 Hb_000009_520 Hb_000009_520 Hb_000648_050--Hb_000009_520
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.653756 2.49225 7.86412 8.49859 0.131932 0.414898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.79453 3.26666 0.666265 7.09135 3.56421

CAGE analysis