Hb_000270_180

Information

Type -
Description -
Location Contig270: 161212-170930
Sequence    

Annotation

kegg
ID rcu:RCOM_1513150
description HIPL1 protein precursor, putative
nr
ID XP_012080177.1
description PREDICTED: HIPL1 protein-like [Jatropha curcas]
swissprot
ID Q9SSG3
description HIPL1 protein OS=Arabidopsis thaliana GN=HIPL1 PE=1 SV=2
trembl
ID A0A067KG07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11561 PE=4 SV=1
Gene Ontology
ID GO:0016901
description hipl1 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28174: 161627-167326 , PASA_asmbl_28175: 162368-162485 , PASA_asmbl_28176: 167415-170875
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_180 0.0 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]
2 Hb_000648_050 0.103612774 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
3 Hb_002249_070 0.1383322796 - - gcn4-complementing protein, putative [Ricinus communis]
4 Hb_000368_030 0.1395596295 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
5 Hb_000220_030 0.1434499457 - - PREDICTED: amino-acid permease BAT1 homolog isoform X2 [Jatropha curcas]
6 Hb_000684_520 0.1462065487 - - glutathione S-transferase L3-like [Jatropha curcas]
7 Hb_029385_010 0.1478522428 - - CTP synthase family protein [Populus trichocarpa]
8 Hb_168893_020 0.1516139947 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
9 Hb_007590_090 0.1518008853 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
10 Hb_001817_100 0.1524400649 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
11 Hb_005276_040 0.1535187289 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]
12 Hb_006538_090 0.1546956244 - - PREDICTED: IST1 homolog [Jatropha curcas]
13 Hb_000017_260 0.1552201586 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
14 Hb_000009_520 0.1584345029 - - PREDICTED: wall-associated receptor kinase-like 14 [Jatropha curcas]
15 Hb_000964_030 0.1590689099 - - ADP/ATP carrier 2 [Theobroma cacao]
16 Hb_000110_050 0.1593225487 - - -
17 Hb_006637_030 0.1606871161 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
18 Hb_004005_020 0.161913785 - - PREDICTED: nudix hydrolase 20, chloroplastic-like isoform X1 [Jatropha curcas]
19 Hb_005181_160 0.1620999547 - - PREDICTED: uncharacterized protein LOC105643546 [Jatropha curcas]
20 Hb_007919_020 0.1635112434 - - electron transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000270_180 Hb_000270_180 Hb_000648_050 Hb_000648_050 Hb_000270_180--Hb_000648_050 Hb_002249_070 Hb_002249_070 Hb_000270_180--Hb_002249_070 Hb_000368_030 Hb_000368_030 Hb_000270_180--Hb_000368_030 Hb_000220_030 Hb_000220_030 Hb_000270_180--Hb_000220_030 Hb_000684_520 Hb_000684_520 Hb_000270_180--Hb_000684_520 Hb_029385_010 Hb_029385_010 Hb_000270_180--Hb_029385_010 Hb_007590_090 Hb_007590_090 Hb_000648_050--Hb_007590_090 Hb_002486_080 Hb_002486_080 Hb_000648_050--Hb_002486_080 Hb_000017_260 Hb_000017_260 Hb_000648_050--Hb_000017_260 Hb_001817_100 Hb_001817_100 Hb_000648_050--Hb_001817_100 Hb_000009_520 Hb_000009_520 Hb_000648_050--Hb_000009_520 Hb_012305_130 Hb_012305_130 Hb_002249_070--Hb_012305_130 Hb_000110_120 Hb_000110_120 Hb_002249_070--Hb_000110_120 Hb_021409_080 Hb_021409_080 Hb_002249_070--Hb_021409_080 Hb_000382_020 Hb_000382_020 Hb_002249_070--Hb_000382_020 Hb_002863_030 Hb_002863_030 Hb_002249_070--Hb_002863_030 Hb_005181_160 Hb_005181_160 Hb_000368_030--Hb_005181_160 Hb_001221_330 Hb_001221_330 Hb_000368_030--Hb_001221_330 Hb_001946_220 Hb_001946_220 Hb_000368_030--Hb_001946_220 Hb_007919_020 Hb_007919_020 Hb_000368_030--Hb_007919_020 Hb_000368_030--Hb_002249_070 Hb_000220_030--Hb_000009_520 Hb_000193_260 Hb_000193_260 Hb_000220_030--Hb_000193_260 Hb_000220_030--Hb_000648_050 Hb_000220_030--Hb_000017_260 Hb_002534_130 Hb_002534_130 Hb_000220_030--Hb_002534_130 Hb_001510_020 Hb_001510_020 Hb_000684_520--Hb_001510_020 Hb_168893_020 Hb_168893_020 Hb_000684_520--Hb_168893_020 Hb_010560_050 Hb_010560_050 Hb_000684_520--Hb_010560_050 Hb_004429_090 Hb_004429_090 Hb_000684_520--Hb_004429_090 Hb_000187_040 Hb_000187_040 Hb_000684_520--Hb_000187_040 Hb_000210_060 Hb_000210_060 Hb_000684_520--Hb_000210_060 Hb_100147_010 Hb_100147_010 Hb_029385_010--Hb_100147_010 Hb_001728_140 Hb_001728_140 Hb_029385_010--Hb_001728_140 Hb_029385_010--Hb_001510_020 Hb_000251_030 Hb_000251_030 Hb_029385_010--Hb_000251_030 Hb_001971_060 Hb_001971_060 Hb_029385_010--Hb_001971_060 Hb_000381_110 Hb_000381_110 Hb_029385_010--Hb_000381_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.662513 3.07137 6.36372 6.07828 0.219013 1.31071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.35208 3.72876 4.31946 6.7392 2.42092

CAGE analysis