Hb_000220_030

Information

Type -
Description -
Location Contig220: 73582-78787
Sequence    

Annotation

kegg
ID rcu:RCOM_0577350
description GABA-specific permease, putative
nr
ID XP_012075714.1
description PREDICTED: amino-acid permease BAT1 homolog isoform X2 [Jatropha curcas]
swissprot
ID Q9ZU50
description Amino-acid permease BAT1 OS=Arabidopsis thaliana GN=BAT1 PE=2 SV=2
trembl
ID A0A067KT42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09302 PE=4 SV=1
Gene Ontology
ID GO:0016021
description amino-acid permease bat1 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22634: 73443-78836 , PASA_asmbl_22635: 49257-78836
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000220_030 0.0 - - PREDICTED: amino-acid permease BAT1 homolog isoform X2 [Jatropha curcas]
2 Hb_000270_180 0.1434499457 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]
3 Hb_000009_520 0.1456834383 - - PREDICTED: wall-associated receptor kinase-like 14 [Jatropha curcas]
4 Hb_000193_260 0.1578187872 - - PREDICTED: protein NEN1 [Jatropha curcas]
5 Hb_000648_050 0.1757933388 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
6 Hb_000017_260 0.183983333 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
7 Hb_002534_130 0.1880792127 - - membrane associated ring finger 1,8, putative [Ricinus communis]
8 Hb_000368_030 0.1901381007 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
9 Hb_000465_050 0.1904025844 - - PREDICTED: DNA mismatch repair protein MSH4 [Jatropha curcas]
10 Hb_002686_150 0.1905345619 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
11 Hb_000012_240 0.1955546503 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
12 Hb_010872_070 0.1957178661 - - conserved hypothetical protein [Ricinus communis]
13 Hb_015778_040 0.1972744017 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
14 Hb_006120_150 0.1979477177 - - invertase [Hevea brasiliensis]
15 Hb_053709_050 0.1993216849 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_000029_190 0.1994222404 - - hypothetical protein CISIN_1g025338mg [Citrus sinensis]
17 Hb_006060_020 0.1995769047 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
18 Hb_083940_010 0.2019399401 - - Zeamatin precursor, putative [Ricinus communis]
19 Hb_000227_390 0.2022993902 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
20 Hb_000046_310 0.2055973717 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000220_030 Hb_000220_030 Hb_000270_180 Hb_000270_180 Hb_000220_030--Hb_000270_180 Hb_000009_520 Hb_000009_520 Hb_000220_030--Hb_000009_520 Hb_000193_260 Hb_000193_260 Hb_000220_030--Hb_000193_260 Hb_000648_050 Hb_000648_050 Hb_000220_030--Hb_000648_050 Hb_000017_260 Hb_000017_260 Hb_000220_030--Hb_000017_260 Hb_002534_130 Hb_002534_130 Hb_000220_030--Hb_002534_130 Hb_000270_180--Hb_000648_050 Hb_002249_070 Hb_002249_070 Hb_000270_180--Hb_002249_070 Hb_000368_030 Hb_000368_030 Hb_000270_180--Hb_000368_030 Hb_000684_520 Hb_000684_520 Hb_000270_180--Hb_000684_520 Hb_029385_010 Hb_029385_010 Hb_000270_180--Hb_029385_010 Hb_000009_520--Hb_000193_260 Hb_002686_150 Hb_002686_150 Hb_000009_520--Hb_002686_150 Hb_026198_010 Hb_026198_010 Hb_000009_520--Hb_026198_010 Hb_005946_150 Hb_005946_150 Hb_000009_520--Hb_005946_150 Hb_002235_390 Hb_002235_390 Hb_000009_520--Hb_002235_390 Hb_002203_030 Hb_002203_030 Hb_000009_520--Hb_002203_030 Hb_000193_260--Hb_002534_130 Hb_061256_010 Hb_061256_010 Hb_000193_260--Hb_061256_010 Hb_000193_260--Hb_026198_010 Hb_002693_030 Hb_002693_030 Hb_000193_260--Hb_002693_030 Hb_001147_050 Hb_001147_050 Hb_000193_260--Hb_001147_050 Hb_007590_090 Hb_007590_090 Hb_000648_050--Hb_007590_090 Hb_002486_080 Hb_002486_080 Hb_000648_050--Hb_002486_080 Hb_000648_050--Hb_000017_260 Hb_001817_100 Hb_001817_100 Hb_000648_050--Hb_001817_100 Hb_000648_050--Hb_000009_520 Hb_053709_050 Hb_053709_050 Hb_000017_260--Hb_053709_050 Hb_000227_390 Hb_000227_390 Hb_000017_260--Hb_000227_390 Hb_185830_060 Hb_185830_060 Hb_000017_260--Hb_185830_060 Hb_002193_060 Hb_002193_060 Hb_000017_260--Hb_002193_060 Hb_012262_030 Hb_012262_030 Hb_000017_260--Hb_012262_030 Hb_000590_120 Hb_000590_120 Hb_000017_260--Hb_000590_120 Hb_002534_130--Hb_002693_030 Hb_005686_130 Hb_005686_130 Hb_002534_130--Hb_005686_130 Hb_001269_620 Hb_001269_620 Hb_002534_130--Hb_001269_620 Hb_015778_040 Hb_015778_040 Hb_002534_130--Hb_015778_040 Hb_001277_050 Hb_001277_050 Hb_002534_130--Hb_001277_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.983837 12.488 19.3288 12.9936 0.608487 4.95578
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2742 4.03855 11.0356 11.2099 4.48248

CAGE analysis