Hb_002249_070

Information

Type -
Description -
Location Contig2249: 63272-72670
Sequence    

Annotation

kegg
ID rcu:RCOM_1503910
description gcn4-complementing protein, putative
nr
ID XP_002511098.1
description gcn4-complementing protein, putative [Ricinus communis]
swissprot
ID Q9FIT8
description ADP-ribosylation factor GTPase-activating protein AGD1 OS=Arabidopsis thaliana GN=AGD1 PE=2 SV=2
trembl
ID B9RA73
description Gcn4-complementing protein, putative OS=Ricinus communis GN=RCOM_1503910 PE=4 SV=1
Gene Ontology
ID GO:0005768
description adp-ribosylation factor gtpase-activating protein agd1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23395: 65971-67059
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002249_070 0.0 - - gcn4-complementing protein, putative [Ricinus communis]
2 Hb_012305_130 0.1257187425 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
3 Hb_000110_120 0.1295378111 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
4 Hb_000270_180 0.1383322796 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]
5 Hb_021409_080 0.1385750385 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
6 Hb_000382_020 0.1388509103 - - PREDICTED: uncharacterized protein LOC105633610 [Jatropha curcas]
7 Hb_002863_030 0.1389281614 - - unknown [Populus trichocarpa x Populus deltoides]
8 Hb_002681_200 0.1394621193 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
9 Hb_002301_160 0.142748119 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
10 Hb_005181_160 0.1428545556 - - PREDICTED: uncharacterized protein LOC105643546 [Jatropha curcas]
11 Hb_028049_010 0.1431844233 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
12 Hb_002909_020 0.1520146901 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
13 Hb_000392_340 0.1553359644 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
14 Hb_000110_050 0.1564096055 - - -
15 Hb_000964_030 0.157048073 - - ADP/ATP carrier 2 [Theobroma cacao]
16 Hb_075247_010 0.1579443136 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
17 Hb_006538_090 0.159132438 - - PREDICTED: IST1 homolog [Jatropha curcas]
18 Hb_004627_030 0.1595131044 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
19 Hb_111985_110 0.1601809066 - - thioredoxin H-type 3 [Hevea brasiliensis]
20 Hb_004800_100 0.1617655583 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002249_070 Hb_002249_070 Hb_012305_130 Hb_012305_130 Hb_002249_070--Hb_012305_130 Hb_000110_120 Hb_000110_120 Hb_002249_070--Hb_000110_120 Hb_000270_180 Hb_000270_180 Hb_002249_070--Hb_000270_180 Hb_021409_080 Hb_021409_080 Hb_002249_070--Hb_021409_080 Hb_000382_020 Hb_000382_020 Hb_002249_070--Hb_000382_020 Hb_002863_030 Hb_002863_030 Hb_002249_070--Hb_002863_030 Hb_012305_130--Hb_021409_080 Hb_012305_130--Hb_000110_120 Hb_000964_030 Hb_000964_030 Hb_012305_130--Hb_000964_030 Hb_028049_010 Hb_028049_010 Hb_012305_130--Hb_028049_010 Hb_002110_100 Hb_002110_100 Hb_012305_130--Hb_002110_100 Hb_004627_030 Hb_004627_030 Hb_012305_130--Hb_004627_030 Hb_002301_160 Hb_002301_160 Hb_000110_120--Hb_002301_160 Hb_005460_060 Hb_005460_060 Hb_000110_120--Hb_005460_060 Hb_000009_290 Hb_000009_290 Hb_000110_120--Hb_000009_290 Hb_000110_120--Hb_004627_030 Hb_000077_180 Hb_000077_180 Hb_000110_120--Hb_000077_180 Hb_000648_050 Hb_000648_050 Hb_000270_180--Hb_000648_050 Hb_000368_030 Hb_000368_030 Hb_000270_180--Hb_000368_030 Hb_000220_030 Hb_000220_030 Hb_000270_180--Hb_000220_030 Hb_000684_520 Hb_000684_520 Hb_000270_180--Hb_000684_520 Hb_029385_010 Hb_029385_010 Hb_000270_180--Hb_029385_010 Hb_111985_110 Hb_111985_110 Hb_021409_080--Hb_111985_110 Hb_021409_080--Hb_004627_030 Hb_180343_010 Hb_180343_010 Hb_021409_080--Hb_180343_010 Hb_021409_080--Hb_002110_100 Hb_021409_080--Hb_000110_120 Hb_000771_060 Hb_000771_060 Hb_000382_020--Hb_000771_060 Hb_000382_020--Hb_028049_010 Hb_001242_050 Hb_001242_050 Hb_000382_020--Hb_001242_050 Hb_000270_740 Hb_000270_740 Hb_000382_020--Hb_000270_740 Hb_007441_240 Hb_007441_240 Hb_000382_020--Hb_007441_240 Hb_002681_200 Hb_002681_200 Hb_002863_030--Hb_002681_200 Hb_000608_050 Hb_000608_050 Hb_002863_030--Hb_000608_050 Hb_000803_200 Hb_000803_200 Hb_002863_030--Hb_000803_200 Hb_000849_130 Hb_000849_130 Hb_002863_030--Hb_000849_130 Hb_002863_030--Hb_002301_160 Hb_000392_340 Hb_000392_340 Hb_002863_030--Hb_000392_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0471764 0.134692 0.332969 0.514548 0.0297898 0.0557911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.343233 0.310601 0.283344 0.230549 0.0861672

CAGE analysis