Hb_001242_050

Information

Type -
Description -
Location Contig1242: 64895-66954
Sequence    

Annotation

kegg
ID rcu:RCOM_0961490
description hypothetical protein
nr
ID XP_002524329.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SEB0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0961490 PE=4 SV=1
Gene Ontology
ID GO:0005886
description low affinity potassium transport system protein kup isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07338: 59871-66954 , PASA_asmbl_07339: 59916-66720
cDNA
(Sanger)
(ID:Location)		 044_G13.ab1: 65258-66954

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001242_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000788_060 0.1072775936 - - PREDICTED: uncharacterized protein LOC105629705 [Jatropha curcas]
3 Hb_001377_420 0.1405691524 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005496_090 0.1517377647 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
5 Hb_000465_270 0.1520746211 - - conserved hypothetical protein [Ricinus communis]
6 Hb_075247_010 0.1593600526 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
7 Hb_158092_010 0.1599703349 - - CYP51 [Hevea brasiliensis]
8 Hb_000292_060 0.1620658685 - - transporter, putative [Ricinus communis]
9 Hb_005356_040 0.1636925214 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
10 Hb_148209_010 0.1639367113 - - RAS-related GTP-binding family protein [Populus trichocarpa]
11 Hb_145880_020 0.168307808 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
12 Hb_001123_210 0.1701592132 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
13 Hb_000382_020 0.1701833593 - - PREDICTED: uncharacterized protein LOC105633610 [Jatropha curcas]
14 Hb_083380_010 0.1709114946 - - -
15 Hb_002863_030 0.1723830622 - - unknown [Populus trichocarpa x Populus deltoides]
16 Hb_009486_020 0.1726336428 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
17 Hb_000815_290 0.1754597325 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
18 Hb_005278_040 0.1765778692 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
19 Hb_138585_040 0.1775422541 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
20 Hb_011021_040 0.179564817 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]

Gene co-expression network

sample Hb_001242_050 Hb_001242_050 Hb_000788_060 Hb_000788_060 Hb_001242_050--Hb_000788_060 Hb_001377_420 Hb_001377_420 Hb_001242_050--Hb_001377_420 Hb_005496_090 Hb_005496_090 Hb_001242_050--Hb_005496_090 Hb_000465_270 Hb_000465_270 Hb_001242_050--Hb_000465_270 Hb_075247_010 Hb_075247_010 Hb_001242_050--Hb_075247_010 Hb_158092_010 Hb_158092_010 Hb_001242_050--Hb_158092_010 Hb_000788_060--Hb_075247_010 Hb_000788_060--Hb_000465_270 Hb_023344_080 Hb_023344_080 Hb_000788_060--Hb_023344_080 Hb_002863_030 Hb_002863_030 Hb_000788_060--Hb_002863_030 Hb_001486_010 Hb_001486_010 Hb_000788_060--Hb_001486_010 Hb_001377_420--Hb_158092_010 Hb_001377_420--Hb_005496_090 Hb_000928_110 Hb_000928_110 Hb_001377_420--Hb_000928_110 Hb_005356_040 Hb_005356_040 Hb_001377_420--Hb_005356_040 Hb_003462_120 Hb_003462_120 Hb_001377_420--Hb_003462_120 Hb_130719_010 Hb_130719_010 Hb_005496_090--Hb_130719_010 Hb_000056_250 Hb_000056_250 Hb_005496_090--Hb_000056_250 Hb_000016_170 Hb_000016_170 Hb_005496_090--Hb_000016_170 Hb_138585_040 Hb_138585_040 Hb_005496_090--Hb_138585_040 Hb_083380_010 Hb_083380_010 Hb_005496_090--Hb_083380_010 Hb_003291_020 Hb_003291_020 Hb_005496_090--Hb_003291_020 Hb_000465_270--Hb_005356_040 Hb_004627_030 Hb_004627_030 Hb_000465_270--Hb_004627_030 Hb_000465_270--Hb_000928_110 Hb_000465_270--Hb_075247_010 Hb_004800_100 Hb_004800_100 Hb_000465_270--Hb_004800_100 Hb_126757_010 Hb_126757_010 Hb_000465_270--Hb_126757_010 Hb_075247_010--Hb_004800_100 Hb_075247_010--Hb_004627_030 Hb_012305_130 Hb_012305_130 Hb_075247_010--Hb_012305_130 Hb_000252_100 Hb_000252_100 Hb_075247_010--Hb_000252_100 Hb_158092_010--Hb_003462_120 Hb_001080_280 Hb_001080_280 Hb_158092_010--Hb_001080_280 Hb_001638_230 Hb_001638_230 Hb_158092_010--Hb_001638_230 Hb_000731_260 Hb_000731_260 Hb_158092_010--Hb_000731_260 Hb_148209_010 Hb_148209_010 Hb_158092_010--Hb_148209_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.83062 11.8312 10.626 38.0863 1.67291 5.55417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.7976 36.9098 42.0817 8.74651 7.24692

CAGE analysis