Hb_075247_010

Information

Type -
Description -
Location Contig75247: 4822-7174
Sequence    

Annotation

kegg
ID tcc:TCM_041889
description Actin depolymerizing factor 4
nr
ID XP_010260094.1
description PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
swissprot
ID Q9FVI1
description Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1
trembl
ID A0A061GW84
description Actin depolymerizing factor 4 OS=Theobroma cacao GN=TCM_041889 PE=4 SV=1
Gene Ontology
ID GO:0015629
description actin-depolymerizing factor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56886: 4742-7078
cDNA
(Sanger)
(ID:Location)		 006_L03.ab1: 4749-6989 , 022_F07.ab1: 4742-6988 , 038_D03.ab1: 4742-6988

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_075247_010 0.0 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
2 Hb_004800_100 0.1234189123 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000465_270 0.1254398438 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004627_030 0.1309065641 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
5 Hb_012305_130 0.1314573983 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
6 Hb_000252_100 0.1335435131 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
7 Hb_000788_060 0.1393522014 - - PREDICTED: uncharacterized protein LOC105629705 [Jatropha curcas]
8 Hb_000964_030 0.1418423129 - - ADP/ATP carrier 2 [Theobroma cacao]
9 Hb_000521_130 0.1427696154 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
10 Hb_002863_030 0.1440319192 - - unknown [Populus trichocarpa x Populus deltoides]
11 Hb_001486_010 0.1474608192 - - adenylsulfate kinase, putative [Ricinus communis]
12 Hb_001754_080 0.1478913335 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
13 Hb_126757_010 0.150455074 - - protein phosphatase 2c, putative [Ricinus communis]
14 Hb_011861_100 0.1507346053 - - amino acid transporter, putative [Ricinus communis]
15 Hb_028049_010 0.1512283132 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
16 Hb_000110_120 0.1516584501 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
17 Hb_000454_090 0.1529581353 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
18 Hb_007926_050 0.1536856206 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
19 Hb_000140_380 0.1546569825 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
20 Hb_021409_080 0.1558342155 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_075247_010 Hb_075247_010 Hb_004800_100 Hb_004800_100 Hb_075247_010--Hb_004800_100 Hb_000465_270 Hb_000465_270 Hb_075247_010--Hb_000465_270 Hb_004627_030 Hb_004627_030 Hb_075247_010--Hb_004627_030 Hb_012305_130 Hb_012305_130 Hb_075247_010--Hb_012305_130 Hb_000252_100 Hb_000252_100 Hb_075247_010--Hb_000252_100 Hb_000788_060 Hb_000788_060 Hb_075247_010--Hb_000788_060 Hb_004800_100--Hb_000252_100 Hb_004800_100--Hb_004627_030 Hb_000300_430 Hb_000300_430 Hb_004800_100--Hb_000300_430 Hb_000173_410 Hb_000173_410 Hb_004800_100--Hb_000173_410 Hb_001123_160 Hb_001123_160 Hb_004800_100--Hb_001123_160 Hb_002045_070 Hb_002045_070 Hb_004800_100--Hb_002045_070 Hb_005356_040 Hb_005356_040 Hb_000465_270--Hb_005356_040 Hb_000465_270--Hb_004627_030 Hb_000928_110 Hb_000928_110 Hb_000465_270--Hb_000928_110 Hb_000465_270--Hb_004800_100 Hb_126757_010 Hb_126757_010 Hb_000465_270--Hb_126757_010 Hb_002301_160 Hb_002301_160 Hb_004627_030--Hb_002301_160 Hb_021409_080 Hb_021409_080 Hb_004627_030--Hb_021409_080 Hb_004627_030--Hb_002045_070 Hb_004627_030--Hb_000300_430 Hb_004627_030--Hb_012305_130 Hb_012305_130--Hb_021409_080 Hb_000110_120 Hb_000110_120 Hb_012305_130--Hb_000110_120 Hb_000964_030 Hb_000964_030 Hb_012305_130--Hb_000964_030 Hb_028049_010 Hb_028049_010 Hb_012305_130--Hb_028049_010 Hb_002110_100 Hb_002110_100 Hb_012305_130--Hb_002110_100 Hb_000454_090 Hb_000454_090 Hb_000252_100--Hb_000454_090 Hb_000252_100--Hb_000173_410 Hb_003305_040 Hb_003305_040 Hb_000252_100--Hb_003305_040 Hb_000140_380 Hb_000140_380 Hb_000252_100--Hb_000140_380 Hb_000060_050 Hb_000060_050 Hb_000252_100--Hb_000060_050 Hb_000505_150 Hb_000505_150 Hb_000252_100--Hb_000505_150 Hb_001242_050 Hb_001242_050 Hb_000788_060--Hb_001242_050 Hb_000788_060--Hb_000465_270 Hb_023344_080 Hb_023344_080 Hb_000788_060--Hb_023344_080 Hb_002863_030 Hb_002863_030 Hb_000788_060--Hb_002863_030 Hb_001486_010 Hb_001486_010 Hb_000788_060--Hb_001486_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.0793 58.9752 96.6191 226.769 28.2256 20.6991
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.1439 122.8 210.081 77.6628 49.7752

CAGE analysis