Hb_126757_010

Information

Type -
Description -
Location Contig126757: 30-759
Sequence    

Annotation

kegg
ID rcu:RCOM_0706330
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002516100.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQT1
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0706330 PE=3 SV=1
Gene Ontology
ID GO:0004722
description abscisic acid insensitivity 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08082: 503-632
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126757_010 0.0 - - protein phosphatase 2c, putative [Ricinus communis]
2 Hb_000465_270 0.1271842985 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004627_030 0.1318400505 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
4 Hb_007926_050 0.1371711441 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
5 Hb_001486_190 0.1471250059 - - hypothetical protein JCGZ_02702 [Jatropha curcas]
6 Hb_000402_130 0.1476278294 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
7 Hb_075247_010 0.150455074 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
8 Hb_000066_090 0.1512985579 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
9 Hb_000060_050 0.1518705231 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
10 Hb_145880_020 0.1536963157 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
11 Hb_000212_450 0.155447527 - - PREDICTED: basic leucine zipper and W2 domain-containing protein 2 [Jatropha curcas]
12 Hb_002781_030 0.1566234089 - - protein binding protein, putative [Ricinus communis]
13 Hb_002133_020 0.1586744294 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012305_130 0.1587091948 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
15 Hb_001754_080 0.1589700155 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
16 Hb_000928_110 0.1595895224 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
17 Hb_004800_100 0.1610954138 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002043_040 0.1611623568 - - PREDICTED: uncharacterized protein LOC105631509 [Jatropha curcas]
19 Hb_000704_040 0.1614305435 - - aquaporin sip2.1, putative [Ricinus communis]
20 Hb_000252_100 0.1621500789 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]

Gene co-expression network

sample Hb_126757_010 Hb_126757_010 Hb_000465_270 Hb_000465_270 Hb_126757_010--Hb_000465_270 Hb_004627_030 Hb_004627_030 Hb_126757_010--Hb_004627_030 Hb_007926_050 Hb_007926_050 Hb_126757_010--Hb_007926_050 Hb_001486_190 Hb_001486_190 Hb_126757_010--Hb_001486_190 Hb_000402_130 Hb_000402_130 Hb_126757_010--Hb_000402_130 Hb_075247_010 Hb_075247_010 Hb_126757_010--Hb_075247_010 Hb_005356_040 Hb_005356_040 Hb_000465_270--Hb_005356_040 Hb_000465_270--Hb_004627_030 Hb_000928_110 Hb_000928_110 Hb_000465_270--Hb_000928_110 Hb_000465_270--Hb_075247_010 Hb_004800_100 Hb_004800_100 Hb_000465_270--Hb_004800_100 Hb_004627_030--Hb_004800_100 Hb_002301_160 Hb_002301_160 Hb_004627_030--Hb_002301_160 Hb_021409_080 Hb_021409_080 Hb_004627_030--Hb_021409_080 Hb_002045_070 Hb_002045_070 Hb_004627_030--Hb_002045_070 Hb_000300_430 Hb_000300_430 Hb_004627_030--Hb_000300_430 Hb_012305_130 Hb_012305_130 Hb_004627_030--Hb_012305_130 Hb_001189_040 Hb_001189_040 Hb_007926_050--Hb_001189_040 Hb_000953_130 Hb_000953_130 Hb_007926_050--Hb_000953_130 Hb_000384_070 Hb_000384_070 Hb_007926_050--Hb_000384_070 Hb_002133_020 Hb_002133_020 Hb_007926_050--Hb_002133_020 Hb_007926_050--Hb_002045_070 Hb_033594_080 Hb_033594_080 Hb_007926_050--Hb_033594_080 Hb_000984_310 Hb_000984_310 Hb_001486_190--Hb_000984_310 Hb_000748_030 Hb_000748_030 Hb_001486_190--Hb_000748_030 Hb_000853_200 Hb_000853_200 Hb_001486_190--Hb_000853_200 Hb_005183_170 Hb_005183_170 Hb_001486_190--Hb_005183_170 Hb_146051_010 Hb_146051_010 Hb_001486_190--Hb_146051_010 Hb_000172_100 Hb_000172_100 Hb_001486_190--Hb_000172_100 Hb_005701_120 Hb_005701_120 Hb_000402_130--Hb_005701_120 Hb_033152_070 Hb_033152_070 Hb_000402_130--Hb_033152_070 Hb_002110_100 Hb_002110_100 Hb_000402_130--Hb_002110_100 Hb_003207_020 Hb_003207_020 Hb_000402_130--Hb_003207_020 Hb_000060_050 Hb_000060_050 Hb_000402_130--Hb_000060_050 Hb_000025_190 Hb_000025_190 Hb_000402_130--Hb_000025_190 Hb_075247_010--Hb_004800_100 Hb_075247_010--Hb_004627_030 Hb_075247_010--Hb_012305_130 Hb_000252_100 Hb_000252_100 Hb_075247_010--Hb_000252_100 Hb_000788_060 Hb_000788_060 Hb_075247_010--Hb_000788_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.275 6.19901 3.55668 30.0263 4.6421 3.31969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.91399 10.9606 15.0761 8.7322 6.56115

CAGE analysis