Hb_007926_050

Information

Type -
Description -
Location Contig7926: 64790-65644
Sequence    

Annotation

kegg
ID rcu:RCOM_0225810
description ccr4-associated factor, putative (EC:3.1.13.4)
nr
ID XP_012074359.1
description PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
swissprot
ID Q9FMS6
description Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1
trembl
ID A0A067KMB5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08787 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable ccr4-associated factor 1 homolog 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58422: 65724-65856
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007926_050 0.0 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
2 Hb_001189_040 0.0911064174 - - hypothetical protein POPTR_0014s10420g [Populus trichocarpa]
3 Hb_000953_130 0.1057919154 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
4 Hb_000384_070 0.1108597092 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002133_020 0.1145616492 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002045_070 0.1174299404 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
7 Hb_033594_080 0.1261308597 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
8 Hb_001754_080 0.1280058093 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
9 Hb_013394_050 0.1307034224 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
10 Hb_000140_380 0.1314418225 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
11 Hb_002301_160 0.1318046834 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
12 Hb_000066_090 0.1318797481 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
13 Hb_000359_090 0.1347635129 - - PREDICTED: persulfide dioxygenase ETHE1 homolog, mitochondrial-like [Malus domestica]
14 Hb_000748_030 0.13578986 - - ATP binding protein, putative [Ricinus communis]
15 Hb_038574_010 0.1371574925 - - PREDICTED: vacuolar cation/proton exchanger 3-like isoform X2 [Populus euphratica]
16 Hb_126757_010 0.1371711441 - - protein phosphatase 2c, putative [Ricinus communis]
17 Hb_000060_050 0.1379570267 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
18 Hb_000608_050 0.1383274775 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
19 Hb_000220_100 0.1388293505 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
20 Hb_002298_030 0.140407556 - - PREDICTED: coenzyme Q-binding protein COQ10 homolog, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_007926_050 Hb_007926_050 Hb_001189_040 Hb_001189_040 Hb_007926_050--Hb_001189_040 Hb_000953_130 Hb_000953_130 Hb_007926_050--Hb_000953_130 Hb_000384_070 Hb_000384_070 Hb_007926_050--Hb_000384_070 Hb_002133_020 Hb_002133_020 Hb_007926_050--Hb_002133_020 Hb_002045_070 Hb_002045_070 Hb_007926_050--Hb_002045_070 Hb_033594_080 Hb_033594_080 Hb_007926_050--Hb_033594_080 Hb_001189_040--Hb_002045_070 Hb_038574_010 Hb_038574_010 Hb_001189_040--Hb_038574_010 Hb_000753_230 Hb_000753_230 Hb_001189_040--Hb_000753_230 Hb_001189_040--Hb_000384_070 Hb_001189_040--Hb_033594_080 Hb_000748_030 Hb_000748_030 Hb_000953_130--Hb_000748_030 Hb_000953_130--Hb_000384_070 Hb_000913_040 Hb_000913_040 Hb_000953_130--Hb_000913_040 Hb_019181_030 Hb_019181_030 Hb_000953_130--Hb_019181_030 Hb_005993_010 Hb_005993_010 Hb_000953_130--Hb_005993_010 Hb_002995_050 Hb_002995_050 Hb_000384_070--Hb_002995_050 Hb_002042_150 Hb_002042_150 Hb_000384_070--Hb_002042_150 Hb_001489_110 Hb_001489_110 Hb_000384_070--Hb_001489_110 Hb_000384_070--Hb_002045_070 Hb_004607_090 Hb_004607_090 Hb_000384_070--Hb_004607_090 Hb_000384_070--Hb_002133_020 Hb_001747_030 Hb_001747_030 Hb_002133_020--Hb_001747_030 Hb_000258_240 Hb_000258_240 Hb_002133_020--Hb_000258_240 Hb_000359_090 Hb_000359_090 Hb_002133_020--Hb_000359_090 Hb_002133_020--Hb_019181_030 Hb_002781_030 Hb_002781_030 Hb_002133_020--Hb_002781_030 Hb_002301_160 Hb_002301_160 Hb_002045_070--Hb_002301_160 Hb_000220_100 Hb_000220_100 Hb_002045_070--Hb_000220_100 Hb_004108_220 Hb_004108_220 Hb_002045_070--Hb_004108_220 Hb_002045_070--Hb_033594_080 Hb_000749_050 Hb_000749_050 Hb_002045_070--Hb_000749_050 Hb_000009_290 Hb_000009_290 Hb_002045_070--Hb_000009_290 Hb_000890_150 Hb_000890_150 Hb_033594_080--Hb_000890_150 Hb_000359_060 Hb_000359_060 Hb_033594_080--Hb_000359_060 Hb_033594_080--Hb_000220_100 Hb_000215_320 Hb_000215_320 Hb_033594_080--Hb_000215_320 Hb_033594_080--Hb_004108_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.50016 19.8809 15.9235 56.2149 9.03476 13.2759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3585 32.4865 26.2795 14.142 10.7084

CAGE analysis