Hb_001189_040

Information

Type -
Description -
Location Contig1189: 38734-39129
Sequence    

Annotation

kegg
ID pop:POPTR_0014s10420g
description hypothetical protein
nr
ID XP_006375403.1
description hypothetical protein POPTR_0014s10420g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FQB0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s10420g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001189_040 0.0 - - hypothetical protein POPTR_0014s10420g [Populus trichocarpa]
2 Hb_007926_050 0.0911064174 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
3 Hb_002045_070 0.0969986369 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
4 Hb_038574_010 0.0984431322 - - PREDICTED: vacuolar cation/proton exchanger 3-like isoform X2 [Populus euphratica]
5 Hb_000753_230 0.1069113563 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
6 Hb_000384_070 0.1086935692 - - conserved hypothetical protein [Ricinus communis]
7 Hb_033594_080 0.1117072339 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
8 Hb_000983_050 0.1183339696 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_023344_150 0.1239780068 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
10 Hb_000365_270 0.1241025624 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
11 Hb_005074_030 0.1253706906 - - -
12 Hb_002301_160 0.1276774857 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
13 Hb_005653_070 0.1281951319 - - K+ transport growth defect-like protein [Hevea brasiliensis]
14 Hb_000465_300 0.1294059331 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
15 Hb_000215_320 0.1294675618 - - phosphofructokinase [Hevea brasiliensis]
16 Hb_005162_090 0.1317318918 - - PREDICTED: uncharacterized protein LOC105648425 [Jatropha curcas]
17 Hb_004607_090 0.1320442202 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
18 Hb_001489_110 0.1320609014 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
19 Hb_006643_020 0.132147725 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
20 Hb_000173_470 0.1321650052 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001189_040 Hb_001189_040 Hb_007926_050 Hb_007926_050 Hb_001189_040--Hb_007926_050 Hb_002045_070 Hb_002045_070 Hb_001189_040--Hb_002045_070 Hb_038574_010 Hb_038574_010 Hb_001189_040--Hb_038574_010 Hb_000753_230 Hb_000753_230 Hb_001189_040--Hb_000753_230 Hb_000384_070 Hb_000384_070 Hb_001189_040--Hb_000384_070 Hb_033594_080 Hb_033594_080 Hb_001189_040--Hb_033594_080 Hb_000953_130 Hb_000953_130 Hb_007926_050--Hb_000953_130 Hb_007926_050--Hb_000384_070 Hb_002133_020 Hb_002133_020 Hb_007926_050--Hb_002133_020 Hb_007926_050--Hb_002045_070 Hb_007926_050--Hb_033594_080 Hb_002301_160 Hb_002301_160 Hb_002045_070--Hb_002301_160 Hb_000220_100 Hb_000220_100 Hb_002045_070--Hb_000220_100 Hb_004108_220 Hb_004108_220 Hb_002045_070--Hb_004108_220 Hb_002045_070--Hb_033594_080 Hb_000749_050 Hb_000749_050 Hb_002045_070--Hb_000749_050 Hb_000009_290 Hb_000009_290 Hb_002045_070--Hb_000009_290 Hb_005653_070 Hb_005653_070 Hb_038574_010--Hb_005653_070 Hb_000964_030 Hb_000964_030 Hb_038574_010--Hb_000964_030 Hb_000069_640 Hb_000069_640 Hb_038574_010--Hb_000069_640 Hb_008748_030 Hb_008748_030 Hb_038574_010--Hb_008748_030 Hb_038574_010--Hb_000753_230 Hb_003913_130 Hb_003913_130 Hb_038574_010--Hb_003913_130 Hb_000173_470 Hb_000173_470 Hb_000753_230--Hb_000173_470 Hb_003688_180 Hb_003688_180 Hb_000753_230--Hb_003688_180 Hb_066920_030 Hb_066920_030 Hb_000753_230--Hb_066920_030 Hb_017387_010 Hb_017387_010 Hb_000753_230--Hb_017387_010 Hb_020178_040 Hb_020178_040 Hb_000753_230--Hb_020178_040 Hb_002995_050 Hb_002995_050 Hb_000384_070--Hb_002995_050 Hb_002042_150 Hb_002042_150 Hb_000384_070--Hb_002042_150 Hb_001489_110 Hb_001489_110 Hb_000384_070--Hb_001489_110 Hb_000384_070--Hb_002045_070 Hb_004607_090 Hb_004607_090 Hb_000384_070--Hb_004607_090 Hb_000384_070--Hb_002133_020 Hb_000890_150 Hb_000890_150 Hb_033594_080--Hb_000890_150 Hb_000359_060 Hb_000359_060 Hb_033594_080--Hb_000359_060 Hb_033594_080--Hb_000220_100 Hb_000215_320 Hb_000215_320 Hb_033594_080--Hb_000215_320 Hb_033594_080--Hb_004108_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.30288 23.6651 13.963 37.484 5.77851 12.9103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8001 29.5246 17.5686 11.9223 13.1381

CAGE analysis