Hb_000465_270

Information

Type -
Description -
Location Contig465: 249196-250953
Sequence    

Annotation

kegg
ID rcu:RCOM_0006170
description hypothetical protein
nr
ID XP_002531465.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SZP6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0006170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 029_L10.ab1: 250382-251101

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_270 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005356_040 0.0937877873 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
3 Hb_004627_030 0.1018028442 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
4 Hb_000928_110 0.122623691 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
5 Hb_075247_010 0.1254398438 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
6 Hb_004800_100 0.1264955288 - - conserved hypothetical protein [Ricinus communis]
7 Hb_126757_010 0.1271842985 - - protein phosphatase 2c, putative [Ricinus communis]
8 Hb_002045_070 0.1389352349 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
9 Hb_000220_100 0.1411167858 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
10 Hb_000061_230 0.1424254862 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
11 Hb_000788_060 0.1432646168 - - PREDICTED: uncharacterized protein LOC105629705 [Jatropha curcas]
12 Hb_000140_380 0.14376437 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
13 Hb_000252_100 0.1440980873 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
14 Hb_000300_430 0.1447503612 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
15 Hb_000110_140 0.1448027478 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
16 Hb_000454_090 0.1466030409 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
17 Hb_002301_160 0.1484766434 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
18 Hb_000066_090 0.1488236677 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
19 Hb_000749_050 0.1490429561 - - mitochondrial thioredoxin [Hevea brasiliensis]
20 Hb_000173_410 0.1498432858 - - PREDICTED: BI1-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000465_270 Hb_000465_270 Hb_005356_040 Hb_005356_040 Hb_000465_270--Hb_005356_040 Hb_004627_030 Hb_004627_030 Hb_000465_270--Hb_004627_030 Hb_000928_110 Hb_000928_110 Hb_000465_270--Hb_000928_110 Hb_075247_010 Hb_075247_010 Hb_000465_270--Hb_075247_010 Hb_004800_100 Hb_004800_100 Hb_000465_270--Hb_004800_100 Hb_126757_010 Hb_126757_010 Hb_000465_270--Hb_126757_010 Hb_005356_040--Hb_000928_110 Hb_000007_140 Hb_000007_140 Hb_005356_040--Hb_000007_140 Hb_000110_140 Hb_000110_140 Hb_005356_040--Hb_000110_140 Hb_005356_040--Hb_004800_100 Hb_001504_330 Hb_001504_330 Hb_005356_040--Hb_001504_330 Hb_004627_030--Hb_004800_100 Hb_002301_160 Hb_002301_160 Hb_004627_030--Hb_002301_160 Hb_021409_080 Hb_021409_080 Hb_004627_030--Hb_021409_080 Hb_002045_070 Hb_002045_070 Hb_004627_030--Hb_002045_070 Hb_000300_430 Hb_000300_430 Hb_004627_030--Hb_000300_430 Hb_012305_130 Hb_012305_130 Hb_004627_030--Hb_012305_130 Hb_000928_110--Hb_004800_100 Hb_017131_010 Hb_017131_010 Hb_000928_110--Hb_017131_010 Hb_005488_200 Hb_005488_200 Hb_000928_110--Hb_005488_200 Hb_000700_040 Hb_000700_040 Hb_000928_110--Hb_000700_040 Hb_003376_250 Hb_003376_250 Hb_000928_110--Hb_003376_250 Hb_075247_010--Hb_004800_100 Hb_075247_010--Hb_004627_030 Hb_075247_010--Hb_012305_130 Hb_000252_100 Hb_000252_100 Hb_075247_010--Hb_000252_100 Hb_000788_060 Hb_000788_060 Hb_075247_010--Hb_000788_060 Hb_004800_100--Hb_000252_100 Hb_004800_100--Hb_000300_430 Hb_000173_410 Hb_000173_410 Hb_004800_100--Hb_000173_410 Hb_001123_160 Hb_001123_160 Hb_004800_100--Hb_001123_160 Hb_004800_100--Hb_002045_070 Hb_126757_010--Hb_004627_030 Hb_007926_050 Hb_007926_050 Hb_126757_010--Hb_007926_050 Hb_001486_190 Hb_001486_190 Hb_126757_010--Hb_001486_190 Hb_000402_130 Hb_000402_130 Hb_126757_010--Hb_000402_130 Hb_126757_010--Hb_075247_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.76304 24.0591 13.9667 56.3852 12.2314 5.48054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.7926 36.0555 47.503 17.1416 18.3025

CAGE analysis