Hb_001486_010

Information

Type -
Description -
Location Contig1486: 4738-10259
Sequence    

Annotation

kegg
ID rcu:RCOM_1121520
description adenylsulfate kinase, putative (EC:1.3.1.74)
nr
ID XP_002525424.1
description adenylsulfate kinase, putative [Ricinus communis]
swissprot
ID Q9SRW7
description Adenylyl-sulfate kinase 3 OS=Arabidopsis thaliana GN=APK3 PE=1 SV=1
trembl
ID B9SHF5
description Adenylyl-sulfate kinase OS=Ricinus communis GN=RCOM_1121520 PE=3 SV=1
Gene Ontology
ID GO:0005829
description adenylyl-sulfate kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12214: 3892-10229 , PASA_asmbl_12215: 5792-6110 , PASA_asmbl_12216: 3911-4041
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001486_010 0.0 - - adenylsulfate kinase, putative [Ricinus communis]
2 Hb_075247_010 0.1474608192 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
3 Hb_000788_060 0.1512206309 - - PREDICTED: uncharacterized protein LOC105629705 [Jatropha curcas]
4 Hb_000239_020 0.1634731846 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
5 Hb_009111_020 0.1662665764 - - PREDICTED: calcium-dependent protein kinase 20-like [Jatropha curcas]
6 Hb_001221_330 0.1677059253 - - PREDICTED: uncharacterized protein LOC105648791 [Jatropha curcas]
7 Hb_007262_030 0.1717234957 - - -
8 Hb_010872_070 0.1741088967 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005545_100 0.1741720032 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
10 Hb_000211_030 0.1742474372 - - sugar transporter, putative [Ricinus communis]
11 Hb_000197_250 0.1757587355 - - Chaperone protein dnaJ, putative [Ricinus communis]
12 Hb_000215_080 0.1787432029 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
13 Hb_001504_330 0.1816840711 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
14 Hb_000964_030 0.1867616318 - - ADP/ATP carrier 2 [Theobroma cacao]
15 Hb_000256_040 0.1869896547 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
16 Hb_005542_060 0.1885196707 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_002863_030 0.1899147941 - - unknown [Populus trichocarpa x Populus deltoides]
18 Hb_000189_410 0.1908279639 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002799_040 0.1915139274 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Vitis vinifera]
20 Hb_004429_020 0.191554753 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]

Gene co-expression network

sample Hb_001486_010 Hb_001486_010 Hb_075247_010 Hb_075247_010 Hb_001486_010--Hb_075247_010 Hb_000788_060 Hb_000788_060 Hb_001486_010--Hb_000788_060 Hb_000239_020 Hb_000239_020 Hb_001486_010--Hb_000239_020 Hb_009111_020 Hb_009111_020 Hb_001486_010--Hb_009111_020 Hb_001221_330 Hb_001221_330 Hb_001486_010--Hb_001221_330 Hb_007262_030 Hb_007262_030 Hb_001486_010--Hb_007262_030 Hb_004800_100 Hb_004800_100 Hb_075247_010--Hb_004800_100 Hb_000465_270 Hb_000465_270 Hb_075247_010--Hb_000465_270 Hb_004627_030 Hb_004627_030 Hb_075247_010--Hb_004627_030 Hb_012305_130 Hb_012305_130 Hb_075247_010--Hb_012305_130 Hb_000252_100 Hb_000252_100 Hb_075247_010--Hb_000252_100 Hb_075247_010--Hb_000788_060 Hb_001242_050 Hb_001242_050 Hb_000788_060--Hb_001242_050 Hb_000788_060--Hb_000465_270 Hb_023344_080 Hb_023344_080 Hb_000788_060--Hb_023344_080 Hb_002863_030 Hb_002863_030 Hb_000788_060--Hb_002863_030 Hb_027393_030 Hb_027393_030 Hb_000239_020--Hb_027393_030 Hb_000367_260 Hb_000367_260 Hb_000239_020--Hb_000367_260 Hb_000549_040 Hb_000549_040 Hb_000239_020--Hb_000549_040 Hb_001504_330 Hb_001504_330 Hb_000239_020--Hb_001504_330 Hb_004993_060 Hb_004993_060 Hb_000239_020--Hb_004993_060 Hb_005542_060 Hb_005542_060 Hb_000239_020--Hb_005542_060 Hb_000300_700 Hb_000300_700 Hb_009111_020--Hb_000300_700 Hb_003549_080 Hb_003549_080 Hb_009111_020--Hb_003549_080 Hb_002333_070 Hb_002333_070 Hb_009111_020--Hb_002333_070 Hb_000122_190 Hb_000122_190 Hb_009111_020--Hb_000122_190 Hb_000256_040 Hb_000256_040 Hb_009111_020--Hb_000256_040 Hb_005181_160 Hb_005181_160 Hb_001221_330--Hb_005181_160 Hb_083940_010 Hb_083940_010 Hb_001221_330--Hb_083940_010 Hb_022250_020 Hb_022250_020 Hb_001221_330--Hb_022250_020 Hb_000189_170 Hb_000189_170 Hb_001221_330--Hb_000189_170 Hb_002217_100 Hb_002217_100 Hb_001221_330--Hb_002217_100 Hb_004931_110 Hb_004931_110 Hb_001221_330--Hb_004931_110 Hb_004429_020 Hb_004429_020 Hb_007262_030--Hb_004429_020 Hb_007386_040 Hb_007386_040 Hb_007262_030--Hb_007386_040 Hb_000120_640 Hb_000120_640 Hb_007262_030--Hb_000120_640 Hb_000189_410 Hb_000189_410 Hb_007262_030--Hb_000189_410 Hb_000215_280 Hb_000215_280 Hb_007262_030--Hb_000215_280 Hb_011861_100 Hb_011861_100 Hb_007262_030--Hb_011861_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.84179 6.77879 11.9765 11.5468 1.1978 2.31821
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.46937 7.72946 23.1235 4.13723 3.74013

CAGE analysis