Hb_007262_030

Information

Type -
Description -
Location Contig7262: 35029-42623
Sequence    

Annotation

kegg
ID rcu:RCOM_1445830
description LRX1, putative
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55865: 37300-42452 , PASA_asmbl_55866: 34941-42487 , PASA_asmbl_55867: 36909-37106 , PASA_asmbl_55869: 39867-40150 , PASA_asmbl_55870: 37713-37854
cDNA
(Sanger)
(ID:Location)		 016_C11.ab1: 35006-42487 , 017_E07.ab1: 35046-42487

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007262_030 0.0 - - -
2 Hb_004429_020 0.1251842611 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
3 Hb_007386_040 0.1267548392 - - PREDICTED: acyl-coenzyme A thioesterase 9, mitochondrial-like [Jatropha curcas]
4 Hb_000120_640 0.1319865488 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_000189_410 0.1360527592 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000215_280 0.142763333 - - Protein-tyrosine phosphatase mitochondrial 1, mitochondrial precursor, putative [Ricinus communis]
7 Hb_011861_100 0.1446302351 - - amino acid transporter, putative [Ricinus communis]
8 Hb_010344_050 0.1474973918 - - Adagio 1 -like protein [Gossypium arboreum]
9 Hb_000239_020 0.1506063474 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
10 Hb_000367_260 0.1512949388 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
11 Hb_007533_040 0.1537527006 - - protein phosphatase 2c, putative [Ricinus communis]
12 Hb_003913_130 0.1555861047 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
13 Hb_000226_080 0.1557971027 - - prephenate dehydrogenase, putative [Ricinus communis]
14 Hb_000008_440 0.1572092985 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
15 Hb_000964_030 0.1581693439 - - ADP/ATP carrier 2 [Theobroma cacao]
16 Hb_000505_150 0.1584436533 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
17 Hb_031910_020 0.1587594018 - - PREDICTED: exocyst complex component SEC15A [Jatropha curcas]
18 Hb_001504_330 0.1587815025 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
19 Hb_005489_070 0.159285276 - - PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Zea mays]
20 Hb_038574_010 0.1637883713 - - PREDICTED: vacuolar cation/proton exchanger 3-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_007262_030 Hb_007262_030 Hb_004429_020 Hb_004429_020 Hb_007262_030--Hb_004429_020 Hb_007386_040 Hb_007386_040 Hb_007262_030--Hb_007386_040 Hb_000120_640 Hb_000120_640 Hb_007262_030--Hb_000120_640 Hb_000189_410 Hb_000189_410 Hb_007262_030--Hb_000189_410 Hb_000215_280 Hb_000215_280 Hb_007262_030--Hb_000215_280 Hb_011861_100 Hb_011861_100 Hb_007262_030--Hb_011861_100 Hb_003913_130 Hb_003913_130 Hb_004429_020--Hb_003913_130 Hb_000140_090 Hb_000140_090 Hb_004429_020--Hb_000140_090 Hb_001635_190 Hb_001635_190 Hb_004429_020--Hb_001635_190 Hb_002119_130 Hb_002119_130 Hb_004429_020--Hb_002119_130 Hb_010578_080 Hb_010578_080 Hb_004429_020--Hb_010578_080 Hb_000964_030 Hb_000964_030 Hb_004429_020--Hb_000964_030 Hb_010344_050 Hb_010344_050 Hb_007386_040--Hb_010344_050 Hb_000252_100 Hb_000252_100 Hb_007386_040--Hb_000252_100 Hb_000505_150 Hb_000505_150 Hb_007386_040--Hb_000505_150 Hb_000012_310 Hb_000012_310 Hb_007386_040--Hb_000012_310 Hb_000454_090 Hb_000454_090 Hb_007386_040--Hb_000454_090 Hb_000109_180 Hb_000109_180 Hb_007386_040--Hb_000109_180 Hb_001357_200 Hb_001357_200 Hb_000120_640--Hb_001357_200 Hb_001014_060 Hb_001014_060 Hb_000120_640--Hb_001014_060 Hb_000120_640--Hb_003913_130 Hb_000025_350 Hb_000025_350 Hb_000120_640--Hb_000025_350 Hb_007533_040 Hb_007533_040 Hb_000120_640--Hb_007533_040 Hb_007810_010 Hb_007810_010 Hb_000120_640--Hb_007810_010 Hb_000189_410--Hb_000215_280 Hb_000189_410--Hb_000252_100 Hb_000189_410--Hb_007386_040 Hb_000189_410--Hb_004429_020 Hb_000853_200 Hb_000853_200 Hb_000189_410--Hb_000853_200 Hb_000189_410--Hb_000454_090 Hb_000215_280--Hb_011861_100 Hb_005601_040 Hb_005601_040 Hb_000215_280--Hb_005601_040 Hb_000638_130 Hb_000638_130 Hb_000215_280--Hb_000638_130 Hb_000215_280--Hb_004429_020 Hb_000215_280--Hb_000252_100 Hb_011861_100--Hb_000252_100 Hb_003305_040 Hb_003305_040 Hb_011861_100--Hb_003305_040 Hb_011861_100--Hb_000505_150 Hb_011861_100--Hb_000454_090 Hb_011861_100--Hb_007386_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5487 21.6422 24.1419 28.5883 1.33187 11.2486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7086 18.4349 51.9564 21.8673 25.8759

CAGE analysis