Hb_011861_100

Information

Type -
Description -
Location Contig11861: 108559-110064
Sequence    

Annotation

kegg
ID rcu:RCOM_0011470
description amino acid transporter, putative
nr
ID XP_002530469.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q28HE5
description Probable sodium-coupled neutral amino acid transporter 6 OS=Xenopus tropicalis GN=slc38a6 PE=2 SV=1
trembl
ID B9SWV0
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0011470 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable sodium-coupled neutral amino acid transporter 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05536: 108353-108537
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011861_100 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_000252_100 0.0953867953 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
3 Hb_003305_040 0.0983212757 - - AP47/50p mRNA family protein [Populus trichocarpa]
4 Hb_000215_280 0.1047531557 - - Protein-tyrosine phosphatase mitochondrial 1, mitochondrial precursor, putative [Ricinus communis]
5 Hb_000505_150 0.1064429164 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
6 Hb_000454_090 0.1089685113 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
7 Hb_007386_040 0.1111646104 - - PREDICTED: acyl-coenzyme A thioesterase 9, mitochondrial-like [Jatropha curcas]
8 Hb_000060_050 0.1188219339 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
9 Hb_000521_130 0.1192556147 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
10 Hb_000189_410 0.1196139694 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000243_350 0.1199677069 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Tarenaya hassleriana]
12 Hb_000310_100 0.1230231476 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001153_120 0.1250455851 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
14 Hb_012244_010 0.1259503761 - - PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
15 Hb_010344_050 0.1272101257 - - Adagio 1 -like protein [Gossypium arboreum]
16 Hb_002110_100 0.1280363501 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
17 Hb_002876_270 0.1289121386 - - PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Jatropha curcas]
18 Hb_000173_410 0.1295144615 - - PREDICTED: BI1-like protein [Jatropha curcas]
19 Hb_000027_260 0.1312173255 - - PREDICTED: chaperone protein dnaJ 15 [Jatropha curcas]
20 Hb_008245_010 0.1323036004 - - PREDICTED: protein NEDD1 [Jatropha curcas]

Gene co-expression network

sample Hb_011861_100 Hb_011861_100 Hb_000252_100 Hb_000252_100 Hb_011861_100--Hb_000252_100 Hb_003305_040 Hb_003305_040 Hb_011861_100--Hb_003305_040 Hb_000215_280 Hb_000215_280 Hb_011861_100--Hb_000215_280 Hb_000505_150 Hb_000505_150 Hb_011861_100--Hb_000505_150 Hb_000454_090 Hb_000454_090 Hb_011861_100--Hb_000454_090 Hb_007386_040 Hb_007386_040 Hb_011861_100--Hb_007386_040 Hb_000252_100--Hb_000454_090 Hb_000173_410 Hb_000173_410 Hb_000252_100--Hb_000173_410 Hb_000252_100--Hb_003305_040 Hb_000140_380 Hb_000140_380 Hb_000252_100--Hb_000140_380 Hb_000060_050 Hb_000060_050 Hb_000252_100--Hb_000060_050 Hb_000252_100--Hb_000505_150 Hb_003305_040--Hb_000060_050 Hb_002110_100 Hb_002110_100 Hb_003305_040--Hb_002110_100 Hb_003305_040--Hb_000454_090 Hb_003305_040--Hb_000173_410 Hb_005601_040 Hb_005601_040 Hb_003305_040--Hb_005601_040 Hb_000189_410 Hb_000189_410 Hb_000215_280--Hb_000189_410 Hb_000215_280--Hb_005601_040 Hb_000638_130 Hb_000638_130 Hb_000215_280--Hb_000638_130 Hb_004429_020 Hb_004429_020 Hb_000215_280--Hb_004429_020 Hb_000215_280--Hb_000252_100 Hb_000505_150--Hb_000140_380 Hb_010344_050 Hb_010344_050 Hb_000505_150--Hb_010344_050 Hb_000505_150--Hb_007386_040 Hb_000853_200 Hb_000853_200 Hb_000505_150--Hb_000853_200 Hb_001898_080 Hb_001898_080 Hb_000505_150--Hb_001898_080 Hb_000454_090--Hb_000173_410 Hb_004078_040 Hb_004078_040 Hb_000454_090--Hb_004078_040 Hb_000220_100 Hb_000220_100 Hb_000454_090--Hb_000220_100 Hb_000393_020 Hb_000393_020 Hb_000454_090--Hb_000393_020 Hb_005765_050 Hb_005765_050 Hb_000454_090--Hb_005765_050 Hb_007386_040--Hb_010344_050 Hb_007386_040--Hb_000252_100 Hb_000012_310 Hb_000012_310 Hb_007386_040--Hb_000012_310 Hb_007386_040--Hb_000454_090 Hb_000109_180 Hb_000109_180 Hb_007386_040--Hb_000109_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51801 1.15812 2.06196 5.06568 0.617329 1.05233
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.95841 2.20105 5.28485 2.49891 3.32619

CAGE analysis