Hb_000189_410

Information

Type -
Description -
Location Contig189: 356686-357588
Sequence    

Annotation

kegg
ID rcu:RCOM_1428010
description hypothetical protein
nr
ID XP_002512236.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RER7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1428010 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18688: 356503-357564
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_410 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000215_280 0.0919448614 - - Protein-tyrosine phosphatase mitochondrial 1, mitochondrial precursor, putative [Ricinus communis]
3 Hb_000252_100 0.098498724 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
4 Hb_007386_040 0.1080245496 - - PREDICTED: acyl-coenzyme A thioesterase 9, mitochondrial-like [Jatropha curcas]
5 Hb_004429_020 0.1101473948 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
6 Hb_000853_200 0.1122741791 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
7 Hb_000454_090 0.1168551657 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
8 Hb_000505_150 0.1168647785 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
9 Hb_003305_040 0.1175555801 - - AP47/50p mRNA family protein [Populus trichocarpa]
10 Hb_011861_100 0.1196139694 - - amino acid transporter, putative [Ricinus communis]
11 Hb_000748_030 0.1220781698 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000774_020 0.1221285841 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
13 Hb_000964_030 0.1232071494 - - ADP/ATP carrier 2 [Theobroma cacao]
14 Hb_007533_040 0.1233887843 - - protein phosphatase 2c, putative [Ricinus communis]
15 Hb_000109_180 0.1237799287 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
16 Hb_000173_410 0.1248962116 - - PREDICTED: BI1-like protein [Jatropha curcas]
17 Hb_008748_030 0.1268234696 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000152_320 0.1270256286 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007638_020 0.1279949183 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
20 Hb_012262_030 0.1296558032 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000189_410 Hb_000189_410 Hb_000215_280 Hb_000215_280 Hb_000189_410--Hb_000215_280 Hb_000252_100 Hb_000252_100 Hb_000189_410--Hb_000252_100 Hb_007386_040 Hb_007386_040 Hb_000189_410--Hb_007386_040 Hb_004429_020 Hb_004429_020 Hb_000189_410--Hb_004429_020 Hb_000853_200 Hb_000853_200 Hb_000189_410--Hb_000853_200 Hb_000454_090 Hb_000454_090 Hb_000189_410--Hb_000454_090 Hb_011861_100 Hb_011861_100 Hb_000215_280--Hb_011861_100 Hb_005601_040 Hb_005601_040 Hb_000215_280--Hb_005601_040 Hb_000638_130 Hb_000638_130 Hb_000215_280--Hb_000638_130 Hb_000215_280--Hb_004429_020 Hb_000215_280--Hb_000252_100 Hb_000252_100--Hb_000454_090 Hb_000173_410 Hb_000173_410 Hb_000252_100--Hb_000173_410 Hb_003305_040 Hb_003305_040 Hb_000252_100--Hb_003305_040 Hb_000140_380 Hb_000140_380 Hb_000252_100--Hb_000140_380 Hb_000060_050 Hb_000060_050 Hb_000252_100--Hb_000060_050 Hb_000505_150 Hb_000505_150 Hb_000252_100--Hb_000505_150 Hb_010344_050 Hb_010344_050 Hb_007386_040--Hb_010344_050 Hb_007386_040--Hb_000252_100 Hb_007386_040--Hb_000505_150 Hb_000012_310 Hb_000012_310 Hb_007386_040--Hb_000012_310 Hb_007386_040--Hb_000454_090 Hb_000109_180 Hb_000109_180 Hb_007386_040--Hb_000109_180 Hb_003913_130 Hb_003913_130 Hb_004429_020--Hb_003913_130 Hb_000140_090 Hb_000140_090 Hb_004429_020--Hb_000140_090 Hb_001635_190 Hb_001635_190 Hb_004429_020--Hb_001635_190 Hb_002119_130 Hb_002119_130 Hb_004429_020--Hb_002119_130 Hb_010578_080 Hb_010578_080 Hb_004429_020--Hb_010578_080 Hb_000964_030 Hb_000964_030 Hb_004429_020--Hb_000964_030 Hb_000477_100 Hb_000477_100 Hb_000853_200--Hb_000477_100 Hb_000853_200--Hb_000505_150 Hb_008748_030 Hb_008748_030 Hb_000853_200--Hb_008748_030 Hb_000748_030 Hb_000748_030 Hb_000853_200--Hb_000748_030 Hb_000853_200--Hb_000012_310 Hb_007416_210 Hb_007416_210 Hb_000853_200--Hb_007416_210 Hb_000454_090--Hb_000173_410 Hb_004078_040 Hb_004078_040 Hb_000454_090--Hb_004078_040 Hb_000220_100 Hb_000220_100 Hb_000454_090--Hb_000220_100 Hb_000393_020 Hb_000393_020 Hb_000454_090--Hb_000393_020 Hb_005765_050 Hb_005765_050 Hb_000454_090--Hb_005765_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.44965 3.35423 6.39242 8.52349 1.98062 2.43739
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.53614 4.62351 10.0226 6.83583 4.32411

CAGE analysis