Hb_000215_280

Information

Type -
Description -
Location Contig215: 212430-215599
Sequence    

Annotation

kegg
ID rcu:RCOM_1048860
description Protein-tyrosine phosphatase mitochondrial 1, mitochondrial precursor, putative (EC:3.1.3.16)
nr
ID XP_002514193.1
description Protein-tyrosine phosphatase mitochondrial 1, mitochondrial precursor, putative [Ricinus communis]
swissprot
ID Q9ZQP1
description Putative dual specificity protein phosphatase DSP8 OS=Arabidopsis thaliana GN=DSP8 PE=2 SV=2
trembl
ID B9RKE9
description Protein-tyrosine phosphatase mitochondrial 1, mitochondrial, putative OS=Ricinus communis GN=RCOM_1048860 PE=4 SV=1
Gene Ontology
ID GO:0004725
description dual specificity protein phosphatase dsp8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22201: 213890-215332 , PASA_asmbl_22202: 212518-215446 , PASA_asmbl_22203: 213599-214145
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_280 0.0 - - Protein-tyrosine phosphatase mitochondrial 1, mitochondrial precursor, putative [Ricinus communis]
2 Hb_000189_410 0.0919448614 - - conserved hypothetical protein [Ricinus communis]
3 Hb_011861_100 0.1047531557 - - amino acid transporter, putative [Ricinus communis]
4 Hb_005601_040 0.119254247 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
5 Hb_000638_130 0.1197149304 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
6 Hb_004429_020 0.1210237595 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
7 Hb_000252_100 0.1228576174 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
8 Hb_002119_130 0.1265671382 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
9 Hb_003305_040 0.1273112945 - - AP47/50p mRNA family protein [Populus trichocarpa]
10 Hb_003044_080 0.127463075 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
11 Hb_003360_040 0.1290226517 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
12 Hb_000964_030 0.1305080374 - - ADP/ATP carrier 2 [Theobroma cacao]
13 Hb_002217_100 0.1312059363 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
14 Hb_002045_060 0.1316586195 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
15 Hb_007386_040 0.1318819444 - - PREDICTED: acyl-coenzyme A thioesterase 9, mitochondrial-like [Jatropha curcas]
16 Hb_000109_180 0.1327296321 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
17 Hb_008245_010 0.1333854027 - - PREDICTED: protein NEDD1 [Jatropha curcas]
18 Hb_000454_090 0.1334263852 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
19 Hb_000548_070 0.133946543 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
20 Hb_002876_270 0.1355875913 - - PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000215_280 Hb_000215_280 Hb_000189_410 Hb_000189_410 Hb_000215_280--Hb_000189_410 Hb_011861_100 Hb_011861_100 Hb_000215_280--Hb_011861_100 Hb_005601_040 Hb_005601_040 Hb_000215_280--Hb_005601_040 Hb_000638_130 Hb_000638_130 Hb_000215_280--Hb_000638_130 Hb_004429_020 Hb_004429_020 Hb_000215_280--Hb_004429_020 Hb_000252_100 Hb_000252_100 Hb_000215_280--Hb_000252_100 Hb_000189_410--Hb_000252_100 Hb_007386_040 Hb_007386_040 Hb_000189_410--Hb_007386_040 Hb_000189_410--Hb_004429_020 Hb_000853_200 Hb_000853_200 Hb_000189_410--Hb_000853_200 Hb_000454_090 Hb_000454_090 Hb_000189_410--Hb_000454_090 Hb_011861_100--Hb_000252_100 Hb_003305_040 Hb_003305_040 Hb_011861_100--Hb_003305_040 Hb_000505_150 Hb_000505_150 Hb_011861_100--Hb_000505_150 Hb_011861_100--Hb_000454_090 Hb_011861_100--Hb_007386_040 Hb_001629_030 Hb_001629_030 Hb_005601_040--Hb_001629_030 Hb_001195_400 Hb_001195_400 Hb_005601_040--Hb_001195_400 Hb_001818_100 Hb_001818_100 Hb_005601_040--Hb_001818_100 Hb_005976_080 Hb_005976_080 Hb_005601_040--Hb_005976_080 Hb_000185_220 Hb_000185_220 Hb_005601_040--Hb_000185_220 Hb_005601_040--Hb_003305_040 Hb_000025_350 Hb_000025_350 Hb_000638_130--Hb_000025_350 Hb_001014_060 Hb_001014_060 Hb_000638_130--Hb_001014_060 Hb_005686_130 Hb_005686_130 Hb_000638_130--Hb_005686_130 Hb_000510_170 Hb_000510_170 Hb_000638_130--Hb_000510_170 Hb_003913_130 Hb_003913_130 Hb_000638_130--Hb_003913_130 Hb_065968_010 Hb_065968_010 Hb_000638_130--Hb_065968_010 Hb_004429_020--Hb_003913_130 Hb_000140_090 Hb_000140_090 Hb_004429_020--Hb_000140_090 Hb_001635_190 Hb_001635_190 Hb_004429_020--Hb_001635_190 Hb_002119_130 Hb_002119_130 Hb_004429_020--Hb_002119_130 Hb_010578_080 Hb_010578_080 Hb_004429_020--Hb_010578_080 Hb_000964_030 Hb_000964_030 Hb_004429_020--Hb_000964_030 Hb_000252_100--Hb_000454_090 Hb_000173_410 Hb_000173_410 Hb_000252_100--Hb_000173_410 Hb_000252_100--Hb_003305_040 Hb_000140_380 Hb_000140_380 Hb_000252_100--Hb_000140_380 Hb_000060_050 Hb_000060_050 Hb_000252_100--Hb_000060_050 Hb_000252_100--Hb_000505_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6493 9.09052 24.8355 28.5892 4.71061 5.94011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3129 14.9366 36.126 28.4552 23.4083

CAGE analysis