Hb_027393_030

Information

Type -
Description -
Location Contig27393: 29504-30316
Sequence    

Annotation

kegg
ID tcc:TCM_042195
description Glutaredoxin family protein, putative
nr
ID XP_012078949.1
description PREDICTED: uncharacterized protein At5g39865 [Jatropha curcas]
swissprot
ID Q9FLE8
description Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=2 SV=1
trembl
ID A0A067LMY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17381 PE=4 SV=1
Gene Ontology
ID GO:0044699
description glutaredoxin family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28652: 29692-30045
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027393_030 0.0 - - PREDICTED: uncharacterized protein At5g39865 [Jatropha curcas]
2 Hb_005545_100 0.1007364983 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
3 Hb_000367_260 0.1017245357 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
4 Hb_004375_150 0.1033218359 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
5 Hb_005542_060 0.1137239109 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_005228_070 0.1150054236 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial [Jatropha curcas]
7 Hb_000239_020 0.1155399278 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
8 Hb_000748_130 0.117688128 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
9 Hb_004607_030 0.1210411794 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
10 Hb_000549_040 0.1245708641 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like isoform X1 [Jatropha curcas]
11 Hb_168319_030 0.1313848928 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
12 Hb_000592_020 0.1320129588 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
13 Hb_002284_200 0.1334835777 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
14 Hb_000147_040 0.1350277194 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
15 Hb_025557_030 0.1351413781 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
16 Hb_005188_020 0.1366457409 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
17 Hb_136509_010 0.1376009983 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
18 Hb_030565_030 0.1383508238 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
19 Hb_011030_020 0.13905814 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
20 Hb_000366_090 0.1406312437 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_027393_030 Hb_027393_030 Hb_005545_100 Hb_005545_100 Hb_027393_030--Hb_005545_100 Hb_000367_260 Hb_000367_260 Hb_027393_030--Hb_000367_260 Hb_004375_150 Hb_004375_150 Hb_027393_030--Hb_004375_150 Hb_005542_060 Hb_005542_060 Hb_027393_030--Hb_005542_060 Hb_005228_070 Hb_005228_070 Hb_027393_030--Hb_005228_070 Hb_000239_020 Hb_000239_020 Hb_027393_030--Hb_000239_020 Hb_001504_330 Hb_001504_330 Hb_005545_100--Hb_001504_330 Hb_002284_200 Hb_002284_200 Hb_005545_100--Hb_002284_200 Hb_008566_050 Hb_008566_050 Hb_005545_100--Hb_008566_050 Hb_136509_010 Hb_136509_010 Hb_005545_100--Hb_136509_010 Hb_022250_060 Hb_022250_060 Hb_005545_100--Hb_022250_060 Hb_002217_020 Hb_002217_020 Hb_005545_100--Hb_002217_020 Hb_000367_260--Hb_001504_330 Hb_000603_080 Hb_000603_080 Hb_000367_260--Hb_000603_080 Hb_031910_020 Hb_031910_020 Hb_000367_260--Hb_031910_020 Hb_030565_030 Hb_030565_030 Hb_000367_260--Hb_030565_030 Hb_006824_050 Hb_006824_050 Hb_000367_260--Hb_006824_050 Hb_005188_020 Hb_005188_020 Hb_000367_260--Hb_005188_020 Hb_168319_030 Hb_168319_030 Hb_004375_150--Hb_168319_030 Hb_004607_030 Hb_004607_030 Hb_004375_150--Hb_004607_030 Hb_000366_090 Hb_000366_090 Hb_004375_150--Hb_000366_090 Hb_025557_030 Hb_025557_030 Hb_004375_150--Hb_025557_030 Hb_000009_450 Hb_000009_450 Hb_004375_150--Hb_000009_450 Hb_000033_020 Hb_000033_020 Hb_004375_150--Hb_000033_020 Hb_004785_140 Hb_004785_140 Hb_005542_060--Hb_004785_140 Hb_002205_130 Hb_002205_130 Hb_005542_060--Hb_002205_130 Hb_011030_020 Hb_011030_020 Hb_005542_060--Hb_011030_020 Hb_005542_060--Hb_000239_020 Hb_000748_130 Hb_000748_130 Hb_005542_060--Hb_000748_130 Hb_003938_190 Hb_003938_190 Hb_005228_070--Hb_003938_190 Hb_000039_160 Hb_000039_160 Hb_005228_070--Hb_000039_160 Hb_012325_020 Hb_012325_020 Hb_005228_070--Hb_012325_020 Hb_005228_070--Hb_168319_030 Hb_085863_030 Hb_085863_030 Hb_005228_070--Hb_085863_030 Hb_000063_140 Hb_000063_140 Hb_005228_070--Hb_000063_140 Hb_000239_020--Hb_000367_260 Hb_000549_040 Hb_000549_040 Hb_000239_020--Hb_000549_040 Hb_000239_020--Hb_001504_330 Hb_004993_060 Hb_004993_060 Hb_000239_020--Hb_004993_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.73006 6.49851 4.16215 4.74822 1.14069 5.02161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.1619 8.83073 17.0323 3.65643 3.6554

CAGE analysis