Hb_003938_190

Information

Type -
Description -
Location Contig3938: 173838-176194
Sequence    

Annotation

kegg
ID pop:POPTR_0002s26050g
description POPTRDRAFT_553326; pentatricopeptide repeat-containing family protein
nr
ID XP_012085856.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g06145-like [Jatropha curcas]
swissprot
ID Q56X05
description Pentatricopeptide repeat-containing protein At1g06145 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
trembl
ID A0A067JRH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17714 PE=4 SV=1
Gene Ontology
ID GO:0016020
description pentatricopeptide repeat-containing protein at1g06145-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003938_190 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06145-like [Jatropha curcas]
2 Hb_005228_070 0.0945640977 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial [Jatropha curcas]
3 Hb_021576_110 0.099509099 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
4 Hb_000676_010 0.1137157883 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like [Jatropha curcas]
5 Hb_000002_400 0.1148784986 transcription factor TF Family: Orphans PREDICTED: ethylene receptor 2 [Jatropha curcas]
6 Hb_001085_060 0.1198033402 - - PREDICTED: pentatricopeptide repeat-containing protein At1g04840 [Jatropha curcas]
7 Hb_000140_230 0.1201419026 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
8 Hb_085863_030 0.120653225 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
9 Hb_001818_070 0.1221250427 - - carbon catabolite repressor protein, putative [Ricinus communis]
10 Hb_003211_020 0.1223889489 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Jatropha curcas]
11 Hb_001157_040 0.1233080203 - - casein kinase, putative [Ricinus communis]
12 Hb_004117_260 0.1234760181 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002035_120 0.1254644977 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14330 [Jatropha curcas]
14 Hb_000039_160 0.1259798668 - - PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
15 Hb_004374_070 0.1263499539 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
16 Hb_050622_050 0.1270431566 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
17 Hb_140506_010 0.1281415274 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Jatropha curcas]
18 Hb_000549_040 0.1287875236 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like isoform X1 [Jatropha curcas]
19 Hb_002600_020 0.1294024835 - - unnamed protein product [Vitis vinifera]
20 Hb_001838_060 0.1295336814 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_003938_190 Hb_003938_190 Hb_005228_070 Hb_005228_070 Hb_003938_190--Hb_005228_070 Hb_021576_110 Hb_021576_110 Hb_003938_190--Hb_021576_110 Hb_000676_010 Hb_000676_010 Hb_003938_190--Hb_000676_010 Hb_000002_400 Hb_000002_400 Hb_003938_190--Hb_000002_400 Hb_001085_060 Hb_001085_060 Hb_003938_190--Hb_001085_060 Hb_000140_230 Hb_000140_230 Hb_003938_190--Hb_000140_230 Hb_000039_160 Hb_000039_160 Hb_005228_070--Hb_000039_160 Hb_012325_020 Hb_012325_020 Hb_005228_070--Hb_012325_020 Hb_168319_030 Hb_168319_030 Hb_005228_070--Hb_168319_030 Hb_085863_030 Hb_085863_030 Hb_005228_070--Hb_085863_030 Hb_000063_140 Hb_000063_140 Hb_005228_070--Hb_000063_140 Hb_000331_670 Hb_000331_670 Hb_021576_110--Hb_000331_670 Hb_000868_110 Hb_000868_110 Hb_021576_110--Hb_000868_110 Hb_140506_010 Hb_140506_010 Hb_021576_110--Hb_140506_010 Hb_001818_070 Hb_001818_070 Hb_021576_110--Hb_001818_070 Hb_001157_040 Hb_001157_040 Hb_021576_110--Hb_001157_040 Hb_001838_060 Hb_001838_060 Hb_021576_110--Hb_001838_060 Hb_002035_120 Hb_002035_120 Hb_000676_010--Hb_002035_120 Hb_002110_150 Hb_002110_150 Hb_000676_010--Hb_002110_150 Hb_001247_250 Hb_001247_250 Hb_000676_010--Hb_001247_250 Hb_000676_010--Hb_000140_230 Hb_050622_050 Hb_050622_050 Hb_000676_010--Hb_050622_050 Hb_000676_010--Hb_001818_070 Hb_000002_400--Hb_005228_070 Hb_000002_400--Hb_000039_160 Hb_000019_120 Hb_000019_120 Hb_000002_400--Hb_000019_120 Hb_008566_050 Hb_008566_050 Hb_000002_400--Hb_008566_050 Hb_000117_090 Hb_000117_090 Hb_000002_400--Hb_000117_090 Hb_007441_220 Hb_007441_220 Hb_001085_060--Hb_007441_220 Hb_000041_100 Hb_000041_100 Hb_001085_060--Hb_000041_100 Hb_002942_100 Hb_002942_100 Hb_001085_060--Hb_002942_100 Hb_000107_420 Hb_000107_420 Hb_001085_060--Hb_000107_420 Hb_000603_110 Hb_000603_110 Hb_001085_060--Hb_000603_110 Hb_002316_150 Hb_002316_150 Hb_001085_060--Hb_002316_150 Hb_000264_320 Hb_000264_320 Hb_000140_230--Hb_000264_320 Hb_003020_050 Hb_003020_050 Hb_000140_230--Hb_003020_050 Hb_000140_230--Hb_002316_150 Hb_168697_010 Hb_168697_010 Hb_000140_230--Hb_168697_010 Hb_008775_040 Hb_008775_040 Hb_000140_230--Hb_008775_040 Hb_048219_010 Hb_048219_010 Hb_000140_230--Hb_048219_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.375999 0.812211 0.622046 0.409382 0.644575 0.809739
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.267703 1.01486 1.26848 0.518375 0.363449

CAGE analysis