Hb_000676_010

Information

Type -
Description -
Location Contig676: 8689-10653
Sequence    

Annotation

kegg
ID vvi:100248977
description pentatricopeptide repeat-containing protein At1g20230
nr
ID XP_012086534.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like [Jatropha curcas]
swissprot
ID Q9LNU6
description Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
trembl
ID A0A067JPD3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24008 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53535: 9964-10337 , PASA_asmbl_53536: 10403-10760
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like [Jatropha curcas]
2 Hb_002035_120 0.056869039 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14330 [Jatropha curcas]
3 Hb_002110_150 0.0863394197 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
4 Hb_001247_250 0.0893693095 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
5 Hb_000140_230 0.089550718 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
6 Hb_050622_050 0.0900774899 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
7 Hb_001818_070 0.090591569 - - carbon catabolite repressor protein, putative [Ricinus communis]
8 Hb_002316_150 0.0919897564 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
9 Hb_004208_030 0.0927554752 transcription factor TF Family: MYB-related PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
10 Hb_000201_100 0.0929197346 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
11 Hb_002234_170 0.0930145286 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
12 Hb_002798_070 0.0931131808 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
13 Hb_000230_500 0.0950374643 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
14 Hb_000172_430 0.0955272748 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004374_070 0.0955708073 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
16 Hb_000398_010 0.0982366774 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001838_060 0.1034408242 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
18 Hb_000331_670 0.1037623371 - - PREDICTED: protein tipD [Jatropha curcas]
19 Hb_002783_040 0.1047451837 transcription factor TF Family: IWS1 -
20 Hb_012564_030 0.1056333749 - - coronatine-insensitive 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000676_010 Hb_000676_010 Hb_002035_120 Hb_002035_120 Hb_000676_010--Hb_002035_120 Hb_002110_150 Hb_002110_150 Hb_000676_010--Hb_002110_150 Hb_001247_250 Hb_001247_250 Hb_000676_010--Hb_001247_250 Hb_000140_230 Hb_000140_230 Hb_000676_010--Hb_000140_230 Hb_050622_050 Hb_050622_050 Hb_000676_010--Hb_050622_050 Hb_001818_070 Hb_001818_070 Hb_000676_010--Hb_001818_070 Hb_000201_100 Hb_000201_100 Hb_002035_120--Hb_000201_100 Hb_002035_120--Hb_001247_250 Hb_027295_050 Hb_027295_050 Hb_002035_120--Hb_027295_050 Hb_002725_120 Hb_002725_120 Hb_002035_120--Hb_002725_120 Hb_004374_070 Hb_004374_070 Hb_002035_120--Hb_004374_070 Hb_002046_180 Hb_002046_180 Hb_002110_150--Hb_002046_180 Hb_008725_260 Hb_008725_260 Hb_002110_150--Hb_008725_260 Hb_005779_060 Hb_005779_060 Hb_002110_150--Hb_005779_060 Hb_005463_100 Hb_005463_100 Hb_002110_150--Hb_005463_100 Hb_000016_250 Hb_000016_250 Hb_002110_150--Hb_000016_250 Hb_009767_110 Hb_009767_110 Hb_002110_150--Hb_009767_110 Hb_033006_030 Hb_033006_030 Hb_001247_250--Hb_033006_030 Hb_000172_430 Hb_000172_430 Hb_001247_250--Hb_000172_430 Hb_001247_250--Hb_000201_100 Hb_004208_030 Hb_004208_030 Hb_001247_250--Hb_004208_030 Hb_002234_170 Hb_002234_170 Hb_001247_250--Hb_002234_170 Hb_002073_200 Hb_002073_200 Hb_001247_250--Hb_002073_200 Hb_000264_320 Hb_000264_320 Hb_000140_230--Hb_000264_320 Hb_003020_050 Hb_003020_050 Hb_000140_230--Hb_003020_050 Hb_002316_150 Hb_002316_150 Hb_000140_230--Hb_002316_150 Hb_168697_010 Hb_168697_010 Hb_000140_230--Hb_168697_010 Hb_008775_040 Hb_008775_040 Hb_000140_230--Hb_008775_040 Hb_048219_010 Hb_048219_010 Hb_000140_230--Hb_048219_010 Hb_004117_260 Hb_004117_260 Hb_050622_050--Hb_004117_260 Hb_006017_010 Hb_006017_010 Hb_050622_050--Hb_006017_010 Hb_001617_050 Hb_001617_050 Hb_050622_050--Hb_001617_050 Hb_000297_010 Hb_000297_010 Hb_050622_050--Hb_000297_010 Hb_050622_050--Hb_002110_150 Hb_001318_270 Hb_001318_270 Hb_050622_050--Hb_001318_270 Hb_140506_010 Hb_140506_010 Hb_001818_070--Hb_140506_010 Hb_001838_060 Hb_001838_060 Hb_001818_070--Hb_001838_060 Hb_011491_010 Hb_011491_010 Hb_001818_070--Hb_011491_010 Hb_004767_050 Hb_004767_050 Hb_001818_070--Hb_004767_050 Hb_003211_020 Hb_003211_020 Hb_001818_070--Hb_003211_020 Hb_001818_070--Hb_048219_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.61215 3.04978 1.76068 1.08451 2.24435 1.99125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.49598 2.28172 3.74127 1.21777 1.87428

CAGE analysis