Hb_005542_060

Information

Type -
Description -
Location Contig5542: 62851-70395
Sequence    

Annotation

kegg
ID rcu:RCOM_0689930
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002520874.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q7XJN6
description Pentatricopeptide repeat-containing protein At2g40720 OS=Arabidopsis thaliana GN=PCMP-E26 PE=3 SV=1
trembl
ID B9S4F5
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0689930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48432: 67708-67812
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005542_060 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_004785_140 0.1014740794 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X2 [Jatropha curcas]
3 Hb_027393_030 0.1137239109 - - PREDICTED: uncharacterized protein At5g39865 [Jatropha curcas]
4 Hb_002205_130 0.1274998411 - - hypothetical protein B456_008G176100 [Gossypium raimondii]
5 Hb_011030_020 0.1296355637 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
6 Hb_000239_020 0.1353367994 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
7 Hb_000748_130 0.1353728006 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
8 Hb_001493_180 0.137152323 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
9 Hb_012799_100 0.1417174875 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
10 Hb_004079_030 0.1417911807 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
11 Hb_000367_260 0.1434311116 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
12 Hb_031862_130 0.1441384876 - - transcription factor, putative [Ricinus communis]
13 Hb_030565_030 0.1471231854 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
14 Hb_008695_140 0.1478214079 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
15 Hb_000092_010 0.1485774118 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
16 Hb_000215_080 0.1495474663 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
17 Hb_002027_040 0.1499208872 - - synapse-associated protein, putative [Ricinus communis]
18 Hb_001946_330 0.1513084118 - - PREDICTED: transmembrane protein 128 [Jatropha curcas]
19 Hb_005228_070 0.1516475868 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial [Jatropha curcas]
20 Hb_006711_060 0.1526658021 - - Tubulin beta-1 chain [Morus notabilis]

Gene co-expression network

sample Hb_005542_060 Hb_005542_060 Hb_004785_140 Hb_004785_140 Hb_005542_060--Hb_004785_140 Hb_027393_030 Hb_027393_030 Hb_005542_060--Hb_027393_030 Hb_002205_130 Hb_002205_130 Hb_005542_060--Hb_002205_130 Hb_011030_020 Hb_011030_020 Hb_005542_060--Hb_011030_020 Hb_000239_020 Hb_000239_020 Hb_005542_060--Hb_000239_020 Hb_000748_130 Hb_000748_130 Hb_005542_060--Hb_000748_130 Hb_002205_190 Hb_002205_190 Hb_004785_140--Hb_002205_190 Hb_004785_140--Hb_011030_020 Hb_001493_180 Hb_001493_180 Hb_004785_140--Hb_001493_180 Hb_000236_140 Hb_000236_140 Hb_004785_140--Hb_000236_140 Hb_000445_040 Hb_000445_040 Hb_004785_140--Hb_000445_040 Hb_005545_100 Hb_005545_100 Hb_027393_030--Hb_005545_100 Hb_000367_260 Hb_000367_260 Hb_027393_030--Hb_000367_260 Hb_004375_150 Hb_004375_150 Hb_027393_030--Hb_004375_150 Hb_005228_070 Hb_005228_070 Hb_027393_030--Hb_005228_070 Hb_027393_030--Hb_000239_020 Hb_002205_130--Hb_011030_020 Hb_012799_100 Hb_012799_100 Hb_002205_130--Hb_012799_100 Hb_005162_070 Hb_005162_070 Hb_002205_130--Hb_005162_070 Hb_002284_200 Hb_002284_200 Hb_002205_130--Hb_002284_200 Hb_019263_020 Hb_019263_020 Hb_002205_130--Hb_019263_020 Hb_002027_040 Hb_002027_040 Hb_002205_130--Hb_002027_040 Hb_011030_020--Hb_005162_070 Hb_001189_050 Hb_001189_050 Hb_011030_020--Hb_001189_050 Hb_010608_050 Hb_010608_050 Hb_011030_020--Hb_010608_050 Hb_008695_100 Hb_008695_100 Hb_011030_020--Hb_008695_100 Hb_000617_150 Hb_000617_150 Hb_011030_020--Hb_000617_150 Hb_000239_020--Hb_000367_260 Hb_000549_040 Hb_000549_040 Hb_000239_020--Hb_000549_040 Hb_001504_330 Hb_001504_330 Hb_000239_020--Hb_001504_330 Hb_004993_060 Hb_004993_060 Hb_000239_020--Hb_004993_060 Hb_000748_130--Hb_002284_200 Hb_012760_070 Hb_012760_070 Hb_000748_130--Hb_012760_070 Hb_148113_010 Hb_148113_010 Hb_000748_130--Hb_148113_010 Hb_000748_130--Hb_010608_050 Hb_001959_190 Hb_001959_190 Hb_000748_130--Hb_001959_190 Hb_004607_030 Hb_004607_030 Hb_000748_130--Hb_004607_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.178599 0.216164 0.221459 0.2256 0.104519 0.222364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.246345 0.337159 1.16573 0.173594 0.234851

CAGE analysis