Hb_002205_190

Information

Type -
Description -
Location Contig2205: 138591-142922
Sequence    

Annotation

kegg
ID pmum:103332895
description U-box domain-containing protein 62-like
nr
ID XP_012091141.1
description PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
swissprot
ID Q6DBN5
description U-box domain-containing protein 62 OS=Arabidopsis thaliana GN=PUB62 PE=2 SV=1
trembl
ID A0A067JCW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03318 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 62-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22730: 138600-138811
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_190 0.0 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
2 Hb_000011_330 0.0789772735 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
3 Hb_000567_380 0.0797470296 - - ubiquitin specific protease 39 and snrnp assembly factor, putative [Ricinus communis]
4 Hb_004785_140 0.0820041332 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X2 [Jatropha curcas]
5 Hb_003976_030 0.0919401373 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
6 Hb_008695_140 0.0945252262 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
7 Hb_002496_040 0.0951375094 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03380, mitochondrial [Jatropha curcas]
8 Hb_012325_020 0.1022241102 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
9 Hb_001946_410 0.1094332168 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
10 Hb_000362_120 0.1094633344 - - glutamate receptor 2 plant, putative [Ricinus communis]
11 Hb_000092_010 0.1140722693 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
12 Hb_000442_080 0.1208615497 - - hypothetical protein JCGZ_03373 [Jatropha curcas]
13 Hb_000116_010 0.1220263793 - - isocitrate dehydrogenase, putative [Ricinus communis]
14 Hb_046198_010 0.1249446594 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
15 Hb_000445_040 0.1256746154 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
16 Hb_007765_020 0.1265834103 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
17 Hb_003687_100 0.127644293 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
18 Hb_001811_030 0.1280551319 - - Beta-ureidopropionase, putative [Ricinus communis]
19 Hb_010874_020 0.1304798664 - - PREDICTED: uncharacterized protein LOC105636745 [Jatropha curcas]
20 Hb_080952_010 0.1308197422 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20770 [Jatropha curcas]

Gene co-expression network

sample Hb_002205_190 Hb_002205_190 Hb_000011_330 Hb_000011_330 Hb_002205_190--Hb_000011_330 Hb_000567_380 Hb_000567_380 Hb_002205_190--Hb_000567_380 Hb_004785_140 Hb_004785_140 Hb_002205_190--Hb_004785_140 Hb_003976_030 Hb_003976_030 Hb_002205_190--Hb_003976_030 Hb_008695_140 Hb_008695_140 Hb_002205_190--Hb_008695_140 Hb_002496_040 Hb_002496_040 Hb_002205_190--Hb_002496_040 Hb_000011_330--Hb_000567_380 Hb_000011_330--Hb_003976_030 Hb_000092_010 Hb_000092_010 Hb_000011_330--Hb_000092_010 Hb_000723_130 Hb_000723_130 Hb_000011_330--Hb_000723_130 Hb_046198_010 Hb_046198_010 Hb_000011_330--Hb_046198_010 Hb_000567_380--Hb_008695_140 Hb_000567_380--Hb_003976_030 Hb_012325_020 Hb_012325_020 Hb_000567_380--Hb_012325_020 Hb_050622_050 Hb_050622_050 Hb_000567_380--Hb_050622_050 Hb_005542_060 Hb_005542_060 Hb_004785_140--Hb_005542_060 Hb_011030_020 Hb_011030_020 Hb_004785_140--Hb_011030_020 Hb_001493_180 Hb_001493_180 Hb_004785_140--Hb_001493_180 Hb_000236_140 Hb_000236_140 Hb_004785_140--Hb_000236_140 Hb_000445_040 Hb_000445_040 Hb_004785_140--Hb_000445_040 Hb_003976_030--Hb_000092_010 Hb_003976_030--Hb_012325_020 Hb_000280_080 Hb_000280_080 Hb_003976_030--Hb_000280_080 Hb_005348_140 Hb_005348_140 Hb_003976_030--Hb_005348_140 Hb_001892_020 Hb_001892_020 Hb_003976_030--Hb_001892_020 Hb_007765_020 Hb_007765_020 Hb_008695_140--Hb_007765_020 Hb_008695_140--Hb_000011_330 Hb_001946_410 Hb_001946_410 Hb_008695_140--Hb_001946_410 Hb_008695_140--Hb_004785_140 Hb_003687_100 Hb_003687_100 Hb_002496_040--Hb_003687_100 Hb_000362_120 Hb_000362_120 Hb_002496_040--Hb_000362_120 Hb_001266_060 Hb_001266_060 Hb_002496_040--Hb_001266_060 Hb_000343_130 Hb_000343_130 Hb_002496_040--Hb_000343_130 Hb_000635_220 Hb_000635_220 Hb_002496_040--Hb_000635_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.967 13.62 7.66385 7.10575 12.4195 13.4306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3684 10.5354 48.2717 16.1792 10.2572

CAGE analysis