Hb_001946_410

Information

Type transcription factor
Description TF Family: C3H
Location Contig1946: 335700-339879
Sequence    

Annotation

kegg
ID rcu:RCOM_0221060
description hypothetical protein
nr
ID XP_002524459.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LT81
description Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana GN=At3g19360 PE=2 SV=1
trembl
ID B9SEP0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0221060 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 39

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19440: 335821-339383 , PASA_asmbl_19441: 339741-340176
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_410 0.0 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
2 Hb_002205_190 0.1094332168 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
3 Hb_000567_380 0.1158353425 - - ubiquitin specific protease 39 and snrnp assembly factor, putative [Ricinus communis]
4 Hb_000116_010 0.12026654 - - isocitrate dehydrogenase, putative [Ricinus communis]
5 Hb_008695_140 0.1228342931 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
6 Hb_000011_330 0.1327364502 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
7 Hb_004785_140 0.1361903547 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X2 [Jatropha curcas]
8 Hb_000092_010 0.1389368716 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
9 Hb_046198_010 0.1429554211 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
10 Hb_000215_080 0.1435500224 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
11 Hb_003976_030 0.1450017722 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
12 Hb_012325_020 0.1452484792 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
13 Hb_000063_140 0.1474626788 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Jatropha curcas]
14 Hb_011942_070 0.1484777751 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like [Jatropha curcas]
15 Hb_006076_010 0.1499697265 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
16 Hb_000138_110 0.1543006297 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
17 Hb_050622_050 0.1543955347 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
18 Hb_000445_040 0.1550054161 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
19 Hb_000723_200 0.1559009976 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
20 Hb_001021_040 0.156312162 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]

Gene co-expression network

sample Hb_001946_410 Hb_001946_410 Hb_002205_190 Hb_002205_190 Hb_001946_410--Hb_002205_190 Hb_000567_380 Hb_000567_380 Hb_001946_410--Hb_000567_380 Hb_000116_010 Hb_000116_010 Hb_001946_410--Hb_000116_010 Hb_008695_140 Hb_008695_140 Hb_001946_410--Hb_008695_140 Hb_000011_330 Hb_000011_330 Hb_001946_410--Hb_000011_330 Hb_004785_140 Hb_004785_140 Hb_001946_410--Hb_004785_140 Hb_002205_190--Hb_000011_330 Hb_002205_190--Hb_000567_380 Hb_002205_190--Hb_004785_140 Hb_003976_030 Hb_003976_030 Hb_002205_190--Hb_003976_030 Hb_002205_190--Hb_008695_140 Hb_002496_040 Hb_002496_040 Hb_002205_190--Hb_002496_040 Hb_000567_380--Hb_000011_330 Hb_000567_380--Hb_008695_140 Hb_000567_380--Hb_003976_030 Hb_012325_020 Hb_012325_020 Hb_000567_380--Hb_012325_020 Hb_050622_050 Hb_050622_050 Hb_000567_380--Hb_050622_050 Hb_006647_020 Hb_006647_020 Hb_000116_010--Hb_006647_020 Hb_000116_010--Hb_003976_030 Hb_000063_140 Hb_000063_140 Hb_000116_010--Hb_000063_140 Hb_001617_050 Hb_001617_050 Hb_000116_010--Hb_001617_050 Hb_001892_020 Hb_001892_020 Hb_000116_010--Hb_001892_020 Hb_004204_170 Hb_004204_170 Hb_000116_010--Hb_004204_170 Hb_007765_020 Hb_007765_020 Hb_008695_140--Hb_007765_020 Hb_008695_140--Hb_000011_330 Hb_008695_140--Hb_004785_140 Hb_000011_330--Hb_003976_030 Hb_000092_010 Hb_000092_010 Hb_000011_330--Hb_000092_010 Hb_000723_130 Hb_000723_130 Hb_000011_330--Hb_000723_130 Hb_046198_010 Hb_046198_010 Hb_000011_330--Hb_046198_010 Hb_005542_060 Hb_005542_060 Hb_004785_140--Hb_005542_060 Hb_011030_020 Hb_011030_020 Hb_004785_140--Hb_011030_020 Hb_001493_180 Hb_001493_180 Hb_004785_140--Hb_001493_180 Hb_000236_140 Hb_000236_140 Hb_004785_140--Hb_000236_140 Hb_000445_040 Hb_000445_040 Hb_004785_140--Hb_000445_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.04264 5.24239 5.76828 3.39965 5.79099 3.60258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.4975 5.81161 22.9664 6.34847 5.40248

CAGE analysis