Hb_000116_010

Information

Type -
Description -
Location Contig116: 3829-9394
Sequence    

Annotation

kegg
ID rcu:RCOM_0519460
description isocitrate dehydrogenase, putative (EC:1.1.1.41)
nr
ID XP_002528761.1
description isocitrate dehydrogenase, putative [Ricinus communis]
swissprot
ID O81796
description Isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial OS=Arabidopsis thaliana GN=IDH3 PE=1 SV=1
trembl
ID B9SRZ2
description Isocitrate dehydrogenase, putative OS=Ricinus communis GN=RCOM_0519460 PE=3 SV=1
Gene Ontology
ID GO:0000287
description isocitrate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04799: 3863-8507
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_010 0.0 - - isocitrate dehydrogenase, putative [Ricinus communis]
2 Hb_006647_020 0.1075471341 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
3 Hb_003976_030 0.1090647175 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
4 Hb_000063_140 0.1095608102 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Jatropha curcas]
5 Hb_001617_050 0.1143276555 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
6 Hb_001892_020 0.1150719083 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
7 Hb_004204_170 0.1172535734 - - synaptosomal associated protein, putative [Ricinus communis]
8 Hb_012325_020 0.1196398435 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
9 Hb_001946_410 0.12026654 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
10 Hb_000049_310 0.1206542755 - - Myosin-J heavy chain, partial [Glycine soja]
11 Hb_000317_290 0.121633281 - - PREDICTED: VQ motif-containing protein 31 [Jatropha curcas]
12 Hb_002205_190 0.1220263793 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
13 Hb_000445_040 0.1247753128 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
14 Hb_000307_030 0.1269196137 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
15 Hb_019654_100 0.1278964249 - - PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Jatropha curcas]
16 Hb_001199_050 0.1288209293 - - PREDICTED: DNA-3-methyladenine glycosylase-like isoform X1 [Jatropha curcas]
17 Hb_000592_020 0.1294962627 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
18 Hb_005348_140 0.1297778719 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]
19 Hb_000567_380 0.1313536201 - - ubiquitin specific protease 39 and snrnp assembly factor, putative [Ricinus communis]
20 Hb_003862_050 0.1327588567 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]

Gene co-expression network

sample Hb_000116_010 Hb_000116_010 Hb_006647_020 Hb_006647_020 Hb_000116_010--Hb_006647_020 Hb_003976_030 Hb_003976_030 Hb_000116_010--Hb_003976_030 Hb_000063_140 Hb_000063_140 Hb_000116_010--Hb_000063_140 Hb_001617_050 Hb_001617_050 Hb_000116_010--Hb_001617_050 Hb_001892_020 Hb_001892_020 Hb_000116_010--Hb_001892_020 Hb_004204_170 Hb_004204_170 Hb_000116_010--Hb_004204_170 Hb_003787_020 Hb_003787_020 Hb_006647_020--Hb_003787_020 Hb_002006_090 Hb_002006_090 Hb_006647_020--Hb_002006_090 Hb_000111_360 Hb_000111_360 Hb_006647_020--Hb_000111_360 Hb_002056_060 Hb_002056_060 Hb_006647_020--Hb_002056_060 Hb_000406_120 Hb_000406_120 Hb_006647_020--Hb_000406_120 Hb_000092_010 Hb_000092_010 Hb_003976_030--Hb_000092_010 Hb_012325_020 Hb_012325_020 Hb_003976_030--Hb_012325_020 Hb_000280_080 Hb_000280_080 Hb_003976_030--Hb_000280_080 Hb_000011_330 Hb_000011_330 Hb_003976_030--Hb_000011_330 Hb_005348_140 Hb_005348_140 Hb_003976_030--Hb_005348_140 Hb_003976_030--Hb_001892_020 Hb_000175_460 Hb_000175_460 Hb_000063_140--Hb_000175_460 Hb_010172_050 Hb_010172_050 Hb_000063_140--Hb_010172_050 Hb_085863_030 Hb_085863_030 Hb_000063_140--Hb_085863_030 Hb_003862_050 Hb_003862_050 Hb_000063_140--Hb_003862_050 Hb_000063_140--Hb_005348_140 Hb_000063_140--Hb_001617_050 Hb_001617_050--Hb_005348_140 Hb_010128_080 Hb_010128_080 Hb_001617_050--Hb_010128_080 Hb_000646_050 Hb_000646_050 Hb_001617_050--Hb_000646_050 Hb_050622_050 Hb_050622_050 Hb_001617_050--Hb_050622_050 Hb_000538_270 Hb_000538_270 Hb_001617_050--Hb_000538_270 Hb_001226_040 Hb_001226_040 Hb_001617_050--Hb_001226_040 Hb_004907_110 Hb_004907_110 Hb_001892_020--Hb_004907_110 Hb_001892_020--Hb_000280_080 Hb_007532_030 Hb_007532_030 Hb_001892_020--Hb_007532_030 Hb_002631_060 Hb_002631_060 Hb_001892_020--Hb_002631_060 Hb_001178_140 Hb_001178_140 Hb_001892_020--Hb_001178_140 Hb_010883_090 Hb_010883_090 Hb_001892_020--Hb_010883_090 Hb_000856_190 Hb_000856_190 Hb_004204_170--Hb_000856_190 Hb_000983_090 Hb_000983_090 Hb_004204_170--Hb_000983_090 Hb_000085_100 Hb_000085_100 Hb_004204_170--Hb_000085_100 Hb_004204_170--Hb_001617_050 Hb_004204_170--Hb_001178_140 Hb_001277_270 Hb_001277_270 Hb_004204_170--Hb_001277_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.0595 30.0949 17.6576 15.1515 25.9293 13.7319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.0239 28.4863 76.1007 22.9351 11.3617

CAGE analysis