Hb_000567_380

Information

Type -
Description -
Location Contig567: 417505-421966
Sequence    

Annotation

kegg
ID rcu:RCOM_0670010
description ubiquitin specific protease 39 and snrnp assembly factor, putative (EC:3.1.2.15)
nr
ID XP_002520562.1
description ubiquitin specific protease 39 and snrnp assembly factor, putative [Ricinus communis]
swissprot
ID Q53GS9
description U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39 PE=1 SV=2
trembl
ID B9S3J3
description Ubiquitin specific protease 39 and snrnp assembly factor, putative OS=Ricinus communis GN=RCOM_0670010 PE=4 SV=1
Gene Ontology
ID GO:0008233
description u4 tri-snrnp-associated protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49157: 417852-418700 , PASA_asmbl_49158: 417572-421937 , PASA_asmbl_49159: 419341-419701
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_380 0.0 - - ubiquitin specific protease 39 and snrnp assembly factor, putative [Ricinus communis]
2 Hb_000011_330 0.0716522956 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
3 Hb_002205_190 0.0797470296 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
4 Hb_008695_140 0.0934444783 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
5 Hb_003976_030 0.0964896602 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
6 Hb_012325_020 0.1017575524 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
7 Hb_050622_050 0.105814706 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
8 Hb_046198_010 0.1068096725 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
9 Hb_000445_040 0.1084401762 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
10 Hb_001318_270 0.115059193 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
11 Hb_001946_410 0.1158353425 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
12 Hb_000723_200 0.1189360469 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
13 Hb_000335_020 0.1224476322 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000049_310 0.122587396 - - Myosin-J heavy chain, partial [Glycine soja]
15 Hb_011942_070 0.1227215958 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like [Jatropha curcas]
16 Hb_000092_010 0.1233390196 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
17 Hb_004785_140 0.1237072029 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X2 [Jatropha curcas]
18 Hb_000442_080 0.1249492222 - - hypothetical protein JCGZ_03373 [Jatropha curcas]
19 Hb_006017_010 0.1250118039 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
20 Hb_000140_230 0.1251218104 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000567_380 Hb_000567_380 Hb_000011_330 Hb_000011_330 Hb_000567_380--Hb_000011_330 Hb_002205_190 Hb_002205_190 Hb_000567_380--Hb_002205_190 Hb_008695_140 Hb_008695_140 Hb_000567_380--Hb_008695_140 Hb_003976_030 Hb_003976_030 Hb_000567_380--Hb_003976_030 Hb_012325_020 Hb_012325_020 Hb_000567_380--Hb_012325_020 Hb_050622_050 Hb_050622_050 Hb_000567_380--Hb_050622_050 Hb_000011_330--Hb_002205_190 Hb_000011_330--Hb_003976_030 Hb_000092_010 Hb_000092_010 Hb_000011_330--Hb_000092_010 Hb_000723_130 Hb_000723_130 Hb_000011_330--Hb_000723_130 Hb_046198_010 Hb_046198_010 Hb_000011_330--Hb_046198_010 Hb_004785_140 Hb_004785_140 Hb_002205_190--Hb_004785_140 Hb_002205_190--Hb_003976_030 Hb_002205_190--Hb_008695_140 Hb_002496_040 Hb_002496_040 Hb_002205_190--Hb_002496_040 Hb_007765_020 Hb_007765_020 Hb_008695_140--Hb_007765_020 Hb_008695_140--Hb_000011_330 Hb_001946_410 Hb_001946_410 Hb_008695_140--Hb_001946_410 Hb_008695_140--Hb_004785_140 Hb_003976_030--Hb_000092_010 Hb_003976_030--Hb_012325_020 Hb_000280_080 Hb_000280_080 Hb_003976_030--Hb_000280_080 Hb_005348_140 Hb_005348_140 Hb_003976_030--Hb_005348_140 Hb_001892_020 Hb_001892_020 Hb_003976_030--Hb_001892_020 Hb_001318_270 Hb_001318_270 Hb_012325_020--Hb_001318_270 Hb_001454_190 Hb_001454_190 Hb_012325_020--Hb_001454_190 Hb_000445_040 Hb_000445_040 Hb_012325_020--Hb_000445_040 Hb_001726_020 Hb_001726_020 Hb_012325_020--Hb_001726_020 Hb_001959_190 Hb_001959_190 Hb_012325_020--Hb_001959_190 Hb_004117_260 Hb_004117_260 Hb_050622_050--Hb_004117_260 Hb_006017_010 Hb_006017_010 Hb_050622_050--Hb_006017_010 Hb_001617_050 Hb_001617_050 Hb_050622_050--Hb_001617_050 Hb_000297_010 Hb_000297_010 Hb_050622_050--Hb_000297_010 Hb_002110_150 Hb_002110_150 Hb_050622_050--Hb_002110_150 Hb_050622_050--Hb_001318_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1675 13.2533 11.4156 7.68245 16.5771 12.854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.42565 9.69796 38.5451 13.6489 10.7964

CAGE analysis