Hb_001266_060

Information

Type -
Description -
Location Contig1266: 53629-55761
Sequence    

Annotation

kegg
ID pop:POPTR_0007s13220g
description POPTRDRAFT_802947; pentatricopeptide repeat-containing family protein
nr
ID XP_012092722.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At3g47840 [Jatropha curcas]
swissprot
ID Q9STS9
description Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis thaliana GN=PCMP-E43 PE=3 SV=1
trembl
ID A0A067LJW5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22171 PE=4 SV=1
Gene Ontology
ID GO:0004553
description pentatricopeptide repeat-containing protein at3g47840

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08026: 53678-53781
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001266_060 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g47840 [Jatropha curcas]
2 Hb_001226_020 0.0723264464 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Jatropha curcas]
3 Hb_001956_200 0.07391159 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
4 Hb_004452_010 0.0790898198 - - PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]
5 Hb_000427_050 0.0843238812 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_031042_020 0.0852983872 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460 [Jatropha curcas]
7 Hb_003687_100 0.0932621731 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
8 Hb_003750_080 0.0954429079 - - PREDICTED: DNA repair protein complementing XP-C cells homolog [Jatropha curcas]
9 Hb_002496_040 0.0998938817 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03380, mitochondrial [Jatropha curcas]
10 Hb_001975_160 0.1006935462 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_002986_130 0.1038878181 - - PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Jatropha curcas]
12 Hb_046198_010 0.1042172147 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
13 Hb_000007_150 0.1055596301 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
14 Hb_005914_150 0.1064850956 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
15 Hb_001584_160 0.1082903102 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Jatropha curcas]
16 Hb_001507_020 0.1114654916 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
17 Hb_000635_220 0.1119918405 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
18 Hb_007757_110 0.1131475158 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
19 Hb_000230_080 0.1132327724 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
20 Hb_010710_010 0.1133072817 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001266_060 Hb_001266_060 Hb_001226_020 Hb_001226_020 Hb_001266_060--Hb_001226_020 Hb_001956_200 Hb_001956_200 Hb_001266_060--Hb_001956_200 Hb_004452_010 Hb_004452_010 Hb_001266_060--Hb_004452_010 Hb_000427_050 Hb_000427_050 Hb_001266_060--Hb_000427_050 Hb_031042_020 Hb_031042_020 Hb_001266_060--Hb_031042_020 Hb_003687_100 Hb_003687_100 Hb_001266_060--Hb_003687_100 Hb_003750_080 Hb_003750_080 Hb_001226_020--Hb_003750_080 Hb_001226_020--Hb_000427_050 Hb_001226_020--Hb_003687_100 Hb_001226_020--Hb_004452_010 Hb_034271_030 Hb_034271_030 Hb_001226_020--Hb_034271_030 Hb_001956_200--Hb_004452_010 Hb_008500_010 Hb_008500_010 Hb_001956_200--Hb_008500_010 Hb_001584_150 Hb_001584_150 Hb_001956_200--Hb_001584_150 Hb_000049_310 Hb_000049_310 Hb_001956_200--Hb_000049_310 Hb_001956_200--Hb_031042_020 Hb_002636_050 Hb_002636_050 Hb_004452_010--Hb_002636_050 Hb_002678_020 Hb_002678_020 Hb_004452_010--Hb_002678_020 Hb_004452_010--Hb_008500_010 Hb_004452_010--Hb_000427_050 Hb_001159_100 Hb_001159_100 Hb_000427_050--Hb_001159_100 Hb_000427_050--Hb_002678_020 Hb_029584_130 Hb_029584_130 Hb_000427_050--Hb_029584_130 Hb_000007_150 Hb_000007_150 Hb_000427_050--Hb_000007_150 Hb_002986_130 Hb_002986_130 Hb_031042_020--Hb_002986_130 Hb_001584_160 Hb_001584_160 Hb_031042_020--Hb_001584_160 Hb_031042_020--Hb_001584_150 Hb_000574_410 Hb_000574_410 Hb_031042_020--Hb_000574_410 Hb_000635_220 Hb_000635_220 Hb_003687_100--Hb_000635_220 Hb_000236_140 Hb_000236_140 Hb_003687_100--Hb_000236_140 Hb_002496_040 Hb_002496_040 Hb_003687_100--Hb_002496_040 Hb_007075_050 Hb_007075_050 Hb_003687_100--Hb_007075_050 Hb_007416_270 Hb_007416_270 Hb_003687_100--Hb_007416_270 Hb_000343_130 Hb_000343_130 Hb_003687_100--Hb_000343_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.57535 0.64458 0.16299 0.193339 0.802999 0.90896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.39934 0.595363 1.57067 0.618107 0.280115

CAGE analysis