Hb_000049_310

Information

Type -
Description -
Location Contig49: 298608-312795
Sequence    

Annotation

kegg
ID pxb:103960156
description myosin-6-like
nr
ID KHN09406.1
description Myosin-J heavy chain, partial [Glycine soja]
swissprot
ID Q9LKB9
description Myosin-6 OS=Arabidopsis thaliana GN=XI-2 PE=1 SV=1
trembl
ID A0A0B2PJ51
description Myosin-J heavy chain (Fragment) OS=Glycine soja GN=glysoja_016505 PE=4 SV=1
Gene Ontology
ID GO:0016459
description myosin heavy chain family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45277: 298389-303205 , PASA_asmbl_45278: 303416-303696 , PASA_asmbl_45279: 303858-312699
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_310 0.0 - - Myosin-J heavy chain, partial [Glycine soja]
2 Hb_000009_320 0.0729267575 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66631 [Jatropha curcas]
3 Hb_001956_200 0.0838717731 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
4 Hb_004907_110 0.0841460323 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
5 Hb_000280_080 0.0908123305 - - hypothetical protein JCGZ_13377 [Jatropha curcas]
6 Hb_000061_460 0.0948920932 transcription factor TF Family: SNF2 ATP binding protein, putative [Ricinus communis]
7 Hb_012325_020 0.0950029198 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
8 Hb_001892_020 0.0956287696 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
9 Hb_000291_110 0.10086503 - - eukaryotic translation initiation factor [Hevea brasiliensis]
10 Hb_010422_060 0.1043189385 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
11 Hb_003976_030 0.1050901555 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
12 Hb_002631_060 0.107349063 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
13 Hb_010883_090 0.108091743 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
14 Hb_000696_040 0.1084323244 - - protein phosphatase 2c, putative [Ricinus communis]
15 Hb_003058_190 0.1088895454 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
16 Hb_000805_020 0.109327508 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
17 Hb_000317_290 0.1096569828 - - PREDICTED: VQ motif-containing protein 31 [Jatropha curcas]
18 Hb_000445_040 0.1100251372 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
19 Hb_166646_010 0.1105005631 - - hypothetical protein POPTR_0010s22200g [Populus trichocarpa]
20 Hb_002830_030 0.1108595569 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000049_310 Hb_000049_310 Hb_000009_320 Hb_000009_320 Hb_000049_310--Hb_000009_320 Hb_001956_200 Hb_001956_200 Hb_000049_310--Hb_001956_200 Hb_004907_110 Hb_004907_110 Hb_000049_310--Hb_004907_110 Hb_000280_080 Hb_000280_080 Hb_000049_310--Hb_000280_080 Hb_000061_460 Hb_000061_460 Hb_000049_310--Hb_000061_460 Hb_012325_020 Hb_012325_020 Hb_000049_310--Hb_012325_020 Hb_003464_060 Hb_003464_060 Hb_000009_320--Hb_003464_060 Hb_002903_060 Hb_002903_060 Hb_000009_320--Hb_002903_060 Hb_000009_320--Hb_000280_080 Hb_000009_320--Hb_004907_110 Hb_003058_190 Hb_003058_190 Hb_000009_320--Hb_003058_190 Hb_004452_010 Hb_004452_010 Hb_001956_200--Hb_004452_010 Hb_001266_060 Hb_001266_060 Hb_001956_200--Hb_001266_060 Hb_008500_010 Hb_008500_010 Hb_001956_200--Hb_008500_010 Hb_001584_150 Hb_001584_150 Hb_001956_200--Hb_001584_150 Hb_031042_020 Hb_031042_020 Hb_001956_200--Hb_031042_020 Hb_000805_020 Hb_000805_020 Hb_004907_110--Hb_000805_020 Hb_007532_030 Hb_007532_030 Hb_004907_110--Hb_007532_030 Hb_008725_260 Hb_008725_260 Hb_004907_110--Hb_008725_260 Hb_031527_040 Hb_031527_040 Hb_004907_110--Hb_031527_040 Hb_000876_070 Hb_000876_070 Hb_004907_110--Hb_000876_070 Hb_002631_060 Hb_002631_060 Hb_004907_110--Hb_002631_060 Hb_000280_080--Hb_000061_460 Hb_003976_030 Hb_003976_030 Hb_000280_080--Hb_003976_030 Hb_001892_020 Hb_001892_020 Hb_000280_080--Hb_001892_020 Hb_000280_080--Hb_004907_110 Hb_000061_460--Hb_003058_190 Hb_005731_130 Hb_005731_130 Hb_000061_460--Hb_005731_130 Hb_000260_270 Hb_000260_270 Hb_000061_460--Hb_000260_270 Hb_089032_040 Hb_089032_040 Hb_000061_460--Hb_089032_040 Hb_004994_220 Hb_004994_220 Hb_000061_460--Hb_004994_220 Hb_001318_270 Hb_001318_270 Hb_012325_020--Hb_001318_270 Hb_001454_190 Hb_001454_190 Hb_012325_020--Hb_001454_190 Hb_000445_040 Hb_000445_040 Hb_012325_020--Hb_000445_040 Hb_012325_020--Hb_003976_030 Hb_001726_020 Hb_001726_020 Hb_012325_020--Hb_001726_020 Hb_001959_190 Hb_001959_190 Hb_012325_020--Hb_001959_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.156 15.3783 6.86486 6.28633 17.6075 12.0992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.1621 14.5848 28.6841 14.3246 6.40216

CAGE analysis