Hb_002636_050

Information

Type -
Description -
Location Contig2636: 75449-77680
Sequence    

Annotation

kegg
ID pop:POPTR_0010s14610g
description POPTRDRAFT_805233; pentatricopeptide repeat-containing family protein
nr
ID XP_012080484.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930 [Jatropha curcas]
swissprot
ID Q9CAA8
description Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
trembl
ID B9HWT0
description Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0010s14610g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002636_050 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930 [Jatropha curcas]
2 Hb_001437_180 0.0562443386 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
3 Hb_004452_010 0.0850136179 - - PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]
4 Hb_008500_010 0.0903223917 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
5 Hb_001700_040 0.0952093087 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
6 Hb_009486_200 0.095629671 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
7 Hb_001584_150 0.1001394603 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
8 Hb_012656_030 0.1007626958 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
9 Hb_000386_030 0.1008620892 - - PREDICTED: uncharacterized protein LOC105629270 [Jatropha curcas]
10 Hb_000878_010 0.1020647619 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial [Jatropha curcas]
11 Hb_004602_040 0.1022570141 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
12 Hb_000577_010 0.1035728997 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
13 Hb_010172_090 0.1042859651 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_005914_150 0.1052382505 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
15 Hb_004117_310 0.106179414 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
16 Hb_006316_040 0.1064312629 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
17 Hb_008085_010 0.1070864748 - - PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Jatropha curcas]
18 Hb_001956_200 0.1110713694 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
19 Hb_002311_040 0.1116540621 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
20 Hb_007163_090 0.1128977944 - - PREDICTED: protein spt2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002636_050 Hb_002636_050 Hb_001437_180 Hb_001437_180 Hb_002636_050--Hb_001437_180 Hb_004452_010 Hb_004452_010 Hb_002636_050--Hb_004452_010 Hb_008500_010 Hb_008500_010 Hb_002636_050--Hb_008500_010 Hb_001700_040 Hb_001700_040 Hb_002636_050--Hb_001700_040 Hb_009486_200 Hb_009486_200 Hb_002636_050--Hb_009486_200 Hb_001584_150 Hb_001584_150 Hb_002636_050--Hb_001584_150 Hb_004734_060 Hb_004734_060 Hb_001437_180--Hb_004734_060 Hb_001771_130 Hb_001771_130 Hb_001437_180--Hb_001771_130 Hb_008085_010 Hb_008085_010 Hb_001437_180--Hb_008085_010 Hb_000386_030 Hb_000386_030 Hb_001437_180--Hb_000386_030 Hb_004602_040 Hb_004602_040 Hb_001437_180--Hb_004602_040 Hb_001956_200 Hb_001956_200 Hb_004452_010--Hb_001956_200 Hb_001266_060 Hb_001266_060 Hb_004452_010--Hb_001266_060 Hb_002678_020 Hb_002678_020 Hb_004452_010--Hb_002678_020 Hb_004452_010--Hb_008500_010 Hb_000427_050 Hb_000427_050 Hb_004452_010--Hb_000427_050 Hb_006316_040 Hb_006316_040 Hb_008500_010--Hb_006316_040 Hb_008500_010--Hb_001584_150 Hb_012656_030 Hb_012656_030 Hb_008500_010--Hb_012656_030 Hb_004724_060 Hb_004724_060 Hb_008500_010--Hb_004724_060 Hb_015807_070 Hb_015807_070 Hb_008500_010--Hb_015807_070 Hb_002311_040 Hb_002311_040 Hb_008500_010--Hb_002311_040 Hb_000457_260 Hb_000457_260 Hb_001700_040--Hb_000457_260 Hb_000318_510 Hb_000318_510 Hb_001700_040--Hb_000318_510 Hb_000283_070 Hb_000283_070 Hb_001700_040--Hb_000283_070 Hb_000878_010 Hb_000878_010 Hb_001700_040--Hb_000878_010 Hb_005679_050 Hb_005679_050 Hb_001700_040--Hb_005679_050 Hb_000101_240 Hb_000101_240 Hb_001700_040--Hb_000101_240 Hb_009486_200--Hb_002311_040 Hb_009486_200--Hb_008500_010 Hb_004143_130 Hb_004143_130 Hb_009486_200--Hb_004143_130 Hb_009486_200--Hb_012656_030 Hb_009486_200--Hb_002678_020 Hb_000204_210 Hb_000204_210 Hb_009486_200--Hb_000204_210 Hb_007757_110 Hb_007757_110 Hb_001584_150--Hb_007757_110 Hb_001584_150--Hb_000204_210 Hb_000062_250 Hb_000062_250 Hb_001584_150--Hb_000062_250 Hb_001507_020 Hb_001507_020 Hb_001584_150--Hb_001507_020 Hb_001584_150--Hb_002311_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.869927 0.979408 0.186631 0.298094 0.662708 1.44681
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.439898 0.660808 1.13691 0.963019 0.466923

CAGE analysis