Hb_001437_180

Information

Type desease resistance
Description Gene Name: CDC48_N
Location Contig1437: 174734-180479
Sequence    

Annotation

kegg
ID tcc:TCM_042132
description ATPase, AAA-type, CDC48 protein
nr
ID XP_012064740.1
description PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
swissprot
ID P54774
description Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1
trembl
ID A0A067LHB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05462 PE=3 SV=1
Gene Ontology
ID GO:0005524
description cell division cycle protein 48 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11531: 174783-180462
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001437_180 0.0 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
2 Hb_002636_050 0.0562443386 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930 [Jatropha curcas]
3 Hb_004734_060 0.0749152606 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
4 Hb_001771_130 0.0763977783 - - PREDICTED: pentatricopeptide repeat-containing protein At2g27610 [Jatropha curcas]
5 Hb_008085_010 0.0816522817 - - PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Jatropha curcas]
6 Hb_000386_030 0.0823032781 - - PREDICTED: uncharacterized protein LOC105629270 [Jatropha curcas]
7 Hb_004602_040 0.0932031285 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
8 Hb_000803_190 0.0938251557 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
9 Hb_000318_510 0.0952745502 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
10 Hb_000390_070 0.0954734883 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
11 Hb_001700_040 0.0955269132 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
12 Hb_000209_020 0.095677048 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
13 Hb_033152_080 0.0960041551 - - RNA-binding protein Nova-1, putative [Ricinus communis]
14 Hb_007163_090 0.0969190554 - - PREDICTED: protein spt2-like [Jatropha curcas]
15 Hb_000577_010 0.0978024189 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
16 Hb_001663_030 0.1001604947 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
17 Hb_001516_100 0.1004479225 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
18 Hb_002039_010 0.1006226328 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
19 Hb_000878_010 0.1016935337 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial [Jatropha curcas]
20 Hb_001797_050 0.1023290031 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001437_180 Hb_001437_180 Hb_002636_050 Hb_002636_050 Hb_001437_180--Hb_002636_050 Hb_004734_060 Hb_004734_060 Hb_001437_180--Hb_004734_060 Hb_001771_130 Hb_001771_130 Hb_001437_180--Hb_001771_130 Hb_008085_010 Hb_008085_010 Hb_001437_180--Hb_008085_010 Hb_000386_030 Hb_000386_030 Hb_001437_180--Hb_000386_030 Hb_004602_040 Hb_004602_040 Hb_001437_180--Hb_004602_040 Hb_004452_010 Hb_004452_010 Hb_002636_050--Hb_004452_010 Hb_008500_010 Hb_008500_010 Hb_002636_050--Hb_008500_010 Hb_001700_040 Hb_001700_040 Hb_002636_050--Hb_001700_040 Hb_009486_200 Hb_009486_200 Hb_002636_050--Hb_009486_200 Hb_001584_150 Hb_001584_150 Hb_002636_050--Hb_001584_150 Hb_033152_080 Hb_033152_080 Hb_004734_060--Hb_033152_080 Hb_000803_190 Hb_000803_190 Hb_004734_060--Hb_000803_190 Hb_000953_010 Hb_000953_010 Hb_004734_060--Hb_000953_010 Hb_000209_020 Hb_000209_020 Hb_004734_060--Hb_000209_020 Hb_001516_100 Hb_001516_100 Hb_004734_060--Hb_001516_100 Hb_000184_130 Hb_000184_130 Hb_004734_060--Hb_000184_130 Hb_000011_080 Hb_000011_080 Hb_001771_130--Hb_000011_080 Hb_001871_040 Hb_001871_040 Hb_001771_130--Hb_001871_040 Hb_001771_130--Hb_004734_060 Hb_001943_010 Hb_001943_010 Hb_001771_130--Hb_001943_010 Hb_001771_130--Hb_000386_030 Hb_007163_090 Hb_007163_090 Hb_008085_010--Hb_007163_090 Hb_008085_010--Hb_000803_190 Hb_004837_040 Hb_004837_040 Hb_008085_010--Hb_004837_040 Hb_008085_010--Hb_004734_060 Hb_001663_030 Hb_001663_030 Hb_008085_010--Hb_001663_030 Hb_001584_160 Hb_001584_160 Hb_000386_030--Hb_001584_160 Hb_000577_010 Hb_000577_010 Hb_000386_030--Hb_000577_010 Hb_010710_010 Hb_010710_010 Hb_000386_030--Hb_010710_010 Hb_000386_030--Hb_000803_190 Hb_000413_180 Hb_000413_180 Hb_000386_030--Hb_000413_180 Hb_001912_100 Hb_001912_100 Hb_004602_040--Hb_001912_100 Hb_000084_120 Hb_000084_120 Hb_004602_040--Hb_000084_120 Hb_000244_220 Hb_000244_220 Hb_004602_040--Hb_000244_220 Hb_000101_240 Hb_000101_240 Hb_004602_040--Hb_000101_240 Hb_000035_290 Hb_000035_290 Hb_004602_040--Hb_000035_290 Hb_123352_020 Hb_123352_020 Hb_004602_040--Hb_123352_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
179.574 157.188 29.1689 53.3204 141.555 276.878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
87.8282 119.31 172.501 148.708 64.7667

CAGE analysis