Hb_000362_120

Information

Type -
Description -
Location Contig362: 121023-133885
Sequence    

Annotation

kegg
ID rcu:RCOM_1744280
description glutamate receptor 2 plant, putative
nr
ID XP_002518390.1
description glutamate receptor 2 plant, putative [Ricinus communis]
swissprot
ID Q8LGN0
description Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3
trembl
ID B9RXC1
description Glutamate receptor 2 plant, putative OS=Ricinus communis GN=RCOM_1744280 PE=4 SV=1
Gene Ontology
ID GO:0016021
description glutamate receptor -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000362_120 0.0 - - glutamate receptor 2 plant, putative [Ricinus communis]
2 Hb_002496_040 0.0926613799 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03380, mitochondrial [Jatropha curcas]
3 Hb_002205_190 0.1094633344 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
4 Hb_001454_190 0.1143675569 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
5 Hb_012325_020 0.1271584707 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
6 Hb_000340_390 0.1290454603 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
7 Hb_007416_270 0.1290938432 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
8 Hb_003687_100 0.1296622292 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
9 Hb_000172_560 0.1315763304 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Jatropha curcas]
10 Hb_000002_050 0.132867277 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
11 Hb_001898_070 0.1345294905 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16610 [Jatropha curcas]
12 Hb_005188_090 0.1346549915 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
13 Hb_001189_050 0.1348522049 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]
14 Hb_005043_010 0.1367413769 - - calcium ion binding protein, putative [Ricinus communis]
15 Hb_000442_080 0.1383676056 - - hypothetical protein JCGZ_03373 [Jatropha curcas]
16 Hb_004785_140 0.1403370196 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X2 [Jatropha curcas]
17 Hb_011030_020 0.1411390773 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
18 Hb_000865_060 0.1440242803 transcription factor TF Family: FAR1 hypothetical protein CISIN_1g043648mg [Citrus sinensis]
19 Hb_001090_050 0.144104075 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X1 [Jatropha curcas]
20 Hb_000343_130 0.1441426043 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000362_120 Hb_000362_120 Hb_002496_040 Hb_002496_040 Hb_000362_120--Hb_002496_040 Hb_002205_190 Hb_002205_190 Hb_000362_120--Hb_002205_190 Hb_001454_190 Hb_001454_190 Hb_000362_120--Hb_001454_190 Hb_012325_020 Hb_012325_020 Hb_000362_120--Hb_012325_020 Hb_000340_390 Hb_000340_390 Hb_000362_120--Hb_000340_390 Hb_007416_270 Hb_007416_270 Hb_000362_120--Hb_007416_270 Hb_003687_100 Hb_003687_100 Hb_002496_040--Hb_003687_100 Hb_002496_040--Hb_002205_190 Hb_001266_060 Hb_001266_060 Hb_002496_040--Hb_001266_060 Hb_000343_130 Hb_000343_130 Hb_002496_040--Hb_000343_130 Hb_000635_220 Hb_000635_220 Hb_002496_040--Hb_000635_220 Hb_000011_330 Hb_000011_330 Hb_002205_190--Hb_000011_330 Hb_000567_380 Hb_000567_380 Hb_002205_190--Hb_000567_380 Hb_004785_140 Hb_004785_140 Hb_002205_190--Hb_004785_140 Hb_003976_030 Hb_003976_030 Hb_002205_190--Hb_003976_030 Hb_008695_140 Hb_008695_140 Hb_002205_190--Hb_008695_140 Hb_172932_010 Hb_172932_010 Hb_001454_190--Hb_172932_010 Hb_001454_190--Hb_012325_020 Hb_016901_010 Hb_016901_010 Hb_001454_190--Hb_016901_010 Hb_000617_150 Hb_000617_150 Hb_001454_190--Hb_000617_150 Hb_000002_050 Hb_000002_050 Hb_001454_190--Hb_000002_050 Hb_011534_030 Hb_011534_030 Hb_001454_190--Hb_011534_030 Hb_001318_270 Hb_001318_270 Hb_012325_020--Hb_001318_270 Hb_000445_040 Hb_000445_040 Hb_012325_020--Hb_000445_040 Hb_012325_020--Hb_003976_030 Hb_001726_020 Hb_001726_020 Hb_012325_020--Hb_001726_020 Hb_001959_190 Hb_001959_190 Hb_012325_020--Hb_001959_190 Hb_000367_060 Hb_000367_060 Hb_000340_390--Hb_000367_060 Hb_000340_390--Hb_001454_190 Hb_003687_240 Hb_003687_240 Hb_000340_390--Hb_003687_240 Hb_000340_390--Hb_001959_190 Hb_004607_050 Hb_004607_050 Hb_000340_390--Hb_004607_050 Hb_001811_030 Hb_001811_030 Hb_000340_390--Hb_001811_030 Hb_001002_030 Hb_001002_030 Hb_007416_270--Hb_001002_030 Hb_000236_140 Hb_000236_140 Hb_007416_270--Hb_000236_140 Hb_007416_270--Hb_003687_100 Hb_000865_060 Hb_000865_060 Hb_007416_270--Hb_000865_060 Hb_000479_130 Hb_000479_130 Hb_007416_270--Hb_000479_130 Hb_008695_210 Hb_008695_210 Hb_007416_270--Hb_008695_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.235633 0.205228 0.0965548 0.0748698 0.160803 0.359144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.249965 0.288937 0.912146 0.406164 0.264433

CAGE analysis