Hb_004375_150

Information

Type -
Description -
Location Contig4375: 126828-131986
Sequence    

Annotation

kegg
ID cit:102619406
description hypothetical protein
nr
ID XP_012082830.1
description PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID W9RKK7
description Uncharacterized protein OS=Morus notabilis GN=L484_007474 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42541: 131044-131186
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004375_150 0.0 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
2 Hb_168319_030 0.0746346912 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
3 Hb_004607_030 0.0866199953 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
4 Hb_000366_090 0.093857232 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
5 Hb_025557_030 0.096924074 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
6 Hb_000009_450 0.1005957687 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
7 Hb_000033_020 0.1031771262 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_027393_030 0.1033218359 - - PREDICTED: uncharacterized protein At5g39865 [Jatropha curcas]
9 Hb_012760_070 0.1067225759 - - protein phosphatase 2c, putative [Ricinus communis]
10 Hb_027472_170 0.1124785871 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
11 Hb_005228_070 0.1142310203 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial [Jatropha curcas]
12 Hb_000117_090 0.1154632162 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
13 Hb_010608_050 0.1189457106 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
14 Hb_000748_130 0.1206796542 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
15 Hb_000307_030 0.1226861382 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
16 Hb_002284_200 0.1231088263 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
17 Hb_000696_150 0.1242336874 - - PREDICTED: pentatricopeptide repeat-containing protein At3g51320 [Jatropha curcas]
18 Hb_000318_330 0.1245423868 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Jatropha curcas]
19 Hb_002301_060 0.1257094946 - - hypothetical protein JCGZ_21483 [Jatropha curcas]
20 Hb_005545_100 0.1263001233 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004375_150 Hb_004375_150 Hb_168319_030 Hb_168319_030 Hb_004375_150--Hb_168319_030 Hb_004607_030 Hb_004607_030 Hb_004375_150--Hb_004607_030 Hb_000366_090 Hb_000366_090 Hb_004375_150--Hb_000366_090 Hb_025557_030 Hb_025557_030 Hb_004375_150--Hb_025557_030 Hb_000009_450 Hb_000009_450 Hb_004375_150--Hb_000009_450 Hb_000033_020 Hb_000033_020 Hb_004375_150--Hb_000033_020 Hb_168319_030--Hb_000366_090 Hb_000019_060 Hb_000019_060 Hb_168319_030--Hb_000019_060 Hb_027472_170 Hb_027472_170 Hb_168319_030--Hb_027472_170 Hb_000117_090 Hb_000117_090 Hb_168319_030--Hb_000117_090 Hb_021409_030 Hb_021409_030 Hb_168319_030--Hb_021409_030 Hb_001959_190 Hb_001959_190 Hb_004607_030--Hb_001959_190 Hb_000696_040 Hb_000696_040 Hb_004607_030--Hb_000696_040 Hb_000567_120 Hb_000567_120 Hb_004607_030--Hb_000567_120 Hb_010608_050 Hb_010608_050 Hb_004607_030--Hb_010608_050 Hb_008695_100 Hb_008695_100 Hb_004607_030--Hb_008695_100 Hb_004607_030--Hb_025557_030 Hb_000366_090--Hb_000033_020 Hb_000366_090--Hb_000117_090 Hb_000366_090--Hb_000019_060 Hb_000110_320 Hb_000110_320 Hb_000366_090--Hb_000110_320 Hb_000318_330 Hb_000318_330 Hb_025557_030--Hb_000318_330 Hb_025557_030--Hb_027472_170 Hb_000019_130 Hb_000019_130 Hb_025557_030--Hb_000019_130 Hb_011030_020 Hb_011030_020 Hb_025557_030--Hb_011030_020 Hb_000009_450--Hb_000117_090 Hb_000009_450--Hb_000033_020 Hb_141990_040 Hb_141990_040 Hb_000009_450--Hb_141990_040 Hb_012760_070 Hb_012760_070 Hb_000009_450--Hb_012760_070 Hb_008566_050 Hb_008566_050 Hb_000009_450--Hb_008566_050 Hb_000307_030 Hb_000307_030 Hb_000033_020--Hb_000307_030 Hb_000033_020--Hb_168319_030 Hb_000033_020--Hb_000117_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.717203 1.25235 0.495081 0.741281 0.381187 1.12487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.862112 2.19741 2.59043 0.607158 0.452321

CAGE analysis