Hb_027472_170

Information

Type -
Description -
Location Contig27472: 114067-117096
Sequence    

Annotation

kegg
ID pop:POPTR_0007s08080g
description POPTRDRAFT_719111; hypothetical protein
nr
ID XP_002310674.2
description hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
swissprot
ID Q9SVP7
description Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
trembl
ID B9HGU3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s08080g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28771: 115011-115266 , PASA_asmbl_28772: 115554-115903 , PASA_asmbl_28774: 116366-116759 , PASA_asmbl_28775: 117792-120438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027472_170 0.0 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
2 Hb_000019_130 0.0674124006 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
3 Hb_000935_050 0.0699043897 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
4 Hb_000307_030 0.0813990103 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
5 Hb_000007_150 0.084285248 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
6 Hb_168319_030 0.0843382305 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
7 Hb_005686_030 0.0886205303 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Jatropha curcas]
8 Hb_007075_050 0.0900725984 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_119600_040 0.0909679923 - - hypothetical protein JCGZ_08045 [Jatropha curcas]
10 Hb_025557_030 0.0933029806 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
11 Hb_000019_060 0.0956254993 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
12 Hb_004128_180 0.0981379151 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000696_040 0.1007826267 - - protein phosphatase 2c, putative [Ricinus communis]
14 Hb_000574_350 0.1009076667 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
15 Hb_000297_200 0.1012186399 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
16 Hb_007747_200 0.1035002674 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
17 Hb_004607_030 0.1071901469 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
18 Hb_016901_010 0.1105458027 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
19 Hb_000482_010 0.1121905868 - - PREDICTED: probable ADP,ATP carrier protein At5g56450 [Jatropha curcas]
20 Hb_004375_150 0.1124785871 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]

Gene co-expression network

sample Hb_027472_170 Hb_027472_170 Hb_000019_130 Hb_000019_130 Hb_027472_170--Hb_000019_130 Hb_000935_050 Hb_000935_050 Hb_027472_170--Hb_000935_050 Hb_000307_030 Hb_000307_030 Hb_027472_170--Hb_000307_030 Hb_000007_150 Hb_000007_150 Hb_027472_170--Hb_000007_150 Hb_168319_030 Hb_168319_030 Hb_027472_170--Hb_168319_030 Hb_005686_030 Hb_005686_030 Hb_027472_170--Hb_005686_030 Hb_007747_200 Hb_007747_200 Hb_000019_130--Hb_007747_200 Hb_000019_130--Hb_000935_050 Hb_000997_400 Hb_000997_400 Hb_000019_130--Hb_000997_400 Hb_000019_130--Hb_000007_150 Hb_007075_050 Hb_007075_050 Hb_000019_130--Hb_007075_050 Hb_119600_040 Hb_119600_040 Hb_000935_050--Hb_119600_040 Hb_000935_050--Hb_007075_050 Hb_000297_200 Hb_000297_200 Hb_000935_050--Hb_000297_200 Hb_000935_050--Hb_007747_200 Hb_016901_010 Hb_016901_010 Hb_000307_030--Hb_016901_010 Hb_000307_030--Hb_000007_150 Hb_000307_030--Hb_000297_200 Hb_000307_030--Hb_000935_050 Hb_002218_010 Hb_002218_010 Hb_000307_030--Hb_002218_010 Hb_029584_130 Hb_029584_130 Hb_000007_150--Hb_029584_130 Hb_000000_250 Hb_000000_250 Hb_000007_150--Hb_000000_250 Hb_034585_060 Hb_034585_060 Hb_000007_150--Hb_034585_060 Hb_000007_150--Hb_000297_200 Hb_000427_050 Hb_000427_050 Hb_000007_150--Hb_000427_050 Hb_000366_090 Hb_000366_090 Hb_168319_030--Hb_000366_090 Hb_004375_150 Hb_004375_150 Hb_168319_030--Hb_004375_150 Hb_000019_060 Hb_000019_060 Hb_168319_030--Hb_000019_060 Hb_000117_090 Hb_000117_090 Hb_168319_030--Hb_000117_090 Hb_021409_030 Hb_021409_030 Hb_168319_030--Hb_021409_030 Hb_005686_030--Hb_000019_130 Hb_005686_030--Hb_119600_040 Hb_005686_030--Hb_000935_050 Hb_005686_030--Hb_007075_050 Hb_004128_180 Hb_004128_180 Hb_005686_030--Hb_004128_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.11751 2.49418 0.839942 0.993934 1.81944 2.61696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.72355 4.11413 6.37915 1.76168 0.651218

CAGE analysis