Hb_000110_320

Information

Type -
Description -
Location Contig110: 341301-343357
Sequence    

Annotation

kegg
ID rcu:RCOM_0352870
description hypothetical protein
nr
ID XP_012082078.1
description PREDICTED: ceramide-1-phosphate transfer protein [Jatropha curcas]
swissprot
ID Q8L7U7
description ACD11 homolog protein OS=Arabidopsis thaliana GN=At4g39670 PE=2 SV=1
trembl
ID A0A067KAV6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18316 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ceramide-1-phosphate transfer protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03079: 341418-343137
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000110_320 0.0 - - PREDICTED: ceramide-1-phosphate transfer protein [Jatropha curcas]
2 Hb_000366_090 0.0897250393 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
3 Hb_001956_070 0.0950416738 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
4 Hb_000117_090 0.1013116662 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
5 Hb_168319_030 0.1050571087 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
6 Hb_000175_060 0.1052607385 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
7 Hb_011173_050 0.1134376444 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
8 Hb_034406_020 0.1145101488 - - PREDICTED: jmjC domain-containing protein 7 [Jatropha curcas]
9 Hb_000125_030 0.1159126838 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
10 Hb_000349_290 0.1159529856 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
11 Hb_000563_250 0.1163925689 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
12 Hb_000215_060 0.1176156719 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
13 Hb_002284_200 0.119358212 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
14 Hb_003185_050 0.1205839764 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
15 Hb_021409_030 0.1215789038 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
16 Hb_000009_450 0.1235842337 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
17 Hb_000406_120 0.1239312113 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
18 Hb_007645_080 0.1241942561 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
19 Hb_002056_060 0.1245802451 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
20 Hb_004375_150 0.1279702807 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]

Gene co-expression network

sample Hb_000110_320 Hb_000110_320 Hb_000366_090 Hb_000366_090 Hb_000110_320--Hb_000366_090 Hb_001956_070 Hb_001956_070 Hb_000110_320--Hb_001956_070 Hb_000117_090 Hb_000117_090 Hb_000110_320--Hb_000117_090 Hb_168319_030 Hb_168319_030 Hb_000110_320--Hb_168319_030 Hb_000175_060 Hb_000175_060 Hb_000110_320--Hb_000175_060 Hb_011173_050 Hb_011173_050 Hb_000110_320--Hb_011173_050 Hb_000366_090--Hb_168319_030 Hb_000033_020 Hb_000033_020 Hb_000366_090--Hb_000033_020 Hb_000366_090--Hb_000117_090 Hb_000019_060 Hb_000019_060 Hb_000366_090--Hb_000019_060 Hb_004375_150 Hb_004375_150 Hb_000366_090--Hb_004375_150 Hb_017987_060 Hb_017987_060 Hb_001956_070--Hb_017987_060 Hb_003579_030 Hb_003579_030 Hb_001956_070--Hb_003579_030 Hb_000141_020 Hb_000141_020 Hb_001956_070--Hb_000141_020 Hb_001616_030 Hb_001616_030 Hb_001956_070--Hb_001616_030 Hb_000125_030 Hb_000125_030 Hb_001956_070--Hb_000125_030 Hb_000039_160 Hb_000039_160 Hb_000117_090--Hb_000039_160 Hb_008566_050 Hb_008566_050 Hb_000117_090--Hb_008566_050 Hb_000117_090--Hb_168319_030 Hb_021409_030 Hb_021409_030 Hb_000117_090--Hb_021409_030 Hb_000563_250 Hb_000563_250 Hb_000117_090--Hb_000563_250 Hb_168319_030--Hb_004375_150 Hb_168319_030--Hb_000019_060 Hb_027472_170 Hb_027472_170 Hb_168319_030--Hb_027472_170 Hb_168319_030--Hb_021409_030 Hb_000175_060--Hb_011173_050 Hb_000215_060 Hb_000215_060 Hb_000175_060--Hb_000215_060 Hb_000086_280 Hb_000086_280 Hb_000175_060--Hb_000086_280 Hb_004586_320 Hb_004586_320 Hb_000175_060--Hb_004586_320 Hb_005568_120 Hb_005568_120 Hb_000175_060--Hb_005568_120 Hb_005883_100 Hb_005883_100 Hb_000175_060--Hb_005883_100 Hb_011173_050--Hb_005568_120 Hb_000111_330 Hb_000111_330 Hb_011173_050--Hb_000111_330 Hb_000368_010 Hb_000368_010 Hb_011173_050--Hb_000368_010 Hb_011173_050--Hb_000215_060 Hb_000373_130 Hb_000373_130 Hb_011173_050--Hb_000373_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.65919 6.89152 4.02982 3.04697 3.1839 4.25148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.32754 19.6741 19.157 6.05816 2.24732

CAGE analysis