Hb_002333_070

Information

Type -
Description -
Location Contig2333: 102874-105956
Sequence    

Annotation

kegg
ID rcu:RCOM_1078970
description amino acid binding protein, putative
nr
ID XP_012085730.1
description PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
swissprot
ID Q8LJW3
description ACT domain-containing protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=2 SV=1
trembl
ID A0A067K3L6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18003 PE=4 SV=1
Gene Ontology
ID GO:0016597
description act domain-containing protein acr4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24507: 102802-105845
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002333_070 0.0 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
2 Hb_000566_050 0.1054381271 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
3 Hb_021576_150 0.1084515556 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
4 Hb_027506_040 0.1105609182 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
5 Hb_000122_190 0.1143532703 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
6 Hb_010872_070 0.1145930649 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004965_110 0.1181247958 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
8 Hb_005914_110 0.1192887862 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
9 Hb_004003_030 0.1208834543 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000256_040 0.1227240367 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
11 Hb_004218_010 0.1236598946 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
12 Hb_053709_050 0.125172248 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_001633_090 0.1252087097 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
14 Hb_012286_020 0.1283122329 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
15 Hb_001147_050 0.1298144908 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
16 Hb_000926_200 0.1304033479 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
17 Hb_000235_070 0.1316135219 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
18 Hb_171554_010 0.1326275122 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
19 Hb_000189_570 0.1332585712 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
20 Hb_007741_130 0.134407655 - - hypothetical protein B456_007G089000 [Gossypium raimondii]

Gene co-expression network

sample Hb_002333_070 Hb_002333_070 Hb_000566_050 Hb_000566_050 Hb_002333_070--Hb_000566_050 Hb_021576_150 Hb_021576_150 Hb_002333_070--Hb_021576_150 Hb_027506_040 Hb_027506_040 Hb_002333_070--Hb_027506_040 Hb_000122_190 Hb_000122_190 Hb_002333_070--Hb_000122_190 Hb_010872_070 Hb_010872_070 Hb_002333_070--Hb_010872_070 Hb_004965_110 Hb_004965_110 Hb_002333_070--Hb_004965_110 Hb_012286_020 Hb_012286_020 Hb_000566_050--Hb_012286_020 Hb_004003_030 Hb_004003_030 Hb_000566_050--Hb_004003_030 Hb_000566_050--Hb_021576_150 Hb_001799_160 Hb_001799_160 Hb_000566_050--Hb_001799_160 Hb_171554_010 Hb_171554_010 Hb_000566_050--Hb_171554_010 Hb_004032_320 Hb_004032_320 Hb_000566_050--Hb_004032_320 Hb_000003_680 Hb_000003_680 Hb_021576_150--Hb_000003_680 Hb_021576_150--Hb_001799_160 Hb_001191_080 Hb_001191_080 Hb_021576_150--Hb_001191_080 Hb_021576_150--Hb_012286_020 Hb_000787_080 Hb_000787_080 Hb_021576_150--Hb_000787_080 Hb_000926_080 Hb_000926_080 Hb_027506_040--Hb_000926_080 Hb_000200_300 Hb_000200_300 Hb_027506_040--Hb_000200_300 Hb_011671_260 Hb_011671_260 Hb_027506_040--Hb_011671_260 Hb_000398_170 Hb_000398_170 Hb_027506_040--Hb_000398_170 Hb_003602_060 Hb_003602_060 Hb_027506_040--Hb_003602_060 Hb_000684_030 Hb_000684_030 Hb_027506_040--Hb_000684_030 Hb_001900_140 Hb_001900_140 Hb_000122_190--Hb_001900_140 Hb_001587_180 Hb_001587_180 Hb_000122_190--Hb_001587_180 Hb_007002_020 Hb_007002_020 Hb_000122_190--Hb_007002_020 Hb_000122_190--Hb_004965_110 Hb_000122_190--Hb_027506_040 Hb_000003_780 Hb_000003_780 Hb_000122_190--Hb_000003_780 Hb_026048_110 Hb_026048_110 Hb_010872_070--Hb_026048_110 Hb_002042_170 Hb_002042_170 Hb_010872_070--Hb_002042_170 Hb_000656_390 Hb_000656_390 Hb_010872_070--Hb_000656_390 Hb_013241_010 Hb_013241_010 Hb_010872_070--Hb_013241_010 Hb_007810_010 Hb_007810_010 Hb_010872_070--Hb_007810_010 Hb_003266_030 Hb_003266_030 Hb_004965_110--Hb_003266_030 Hb_007904_230 Hb_007904_230 Hb_004965_110--Hb_007904_230 Hb_004965_110--Hb_011671_260 Hb_006132_090 Hb_006132_090 Hb_004965_110--Hb_006132_090 Hb_004965_110--Hb_000926_080 Hb_004965_110--Hb_001900_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.19164 6.20935 17.6327 10.1264 1.33385 3.1347
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.40117 7.38171 9.20278 3.71757 6.76213

CAGE analysis