Hb_171554_010

Information

Type -
Description -
Location Contig171554: 13988-18143
Sequence    

Annotation

kegg
ID rcu:RCOM_0843790
description hypothetical protein
nr
ID XP_012072235.1
description PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KPC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04709 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16039: 13985-18217
cDNA
(Sanger)
(ID:Location)		 003_H20.ab1: 13985-17742

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171554_010 0.0 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
2 Hb_000003_780 0.0890202184 - - hexokinase [Manihot esculenta]
3 Hb_000003_680 0.089368563 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
4 Hb_087313_010 0.0921275053 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001900_140 0.0928946869 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
6 Hb_012438_030 0.0975900259 - - PREDICTED: protein sym-1 [Jatropha curcas]
7 Hb_012286_020 0.09829017 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
8 Hb_006132_090 0.0984078467 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
9 Hb_002631_240 0.0985178903 - - JHL17M24.3 [Jatropha curcas]
10 Hb_000566_050 0.1003227124 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
11 Hb_000028_520 0.1020185584 - - hypothetical protein L484_025125 [Morus notabilis]
12 Hb_000890_130 0.1056732337 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Phoenix dactylifera]
13 Hb_001776_210 0.1061364299 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
14 Hb_003531_080 0.1073217587 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
15 Hb_003363_070 0.1077191268 - - -
16 Hb_029351_010 0.1081545376 - - PREDICTED: HD domain-containing protein 2 isoform X1 [Jatropha curcas]
17 Hb_000108_050 0.1085580412 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
18 Hb_002874_180 0.1087425558 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
19 Hb_000537_100 0.1092268768 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
20 Hb_001703_040 0.1095628489 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_171554_010 Hb_171554_010 Hb_000003_780 Hb_000003_780 Hb_171554_010--Hb_000003_780 Hb_000003_680 Hb_000003_680 Hb_171554_010--Hb_000003_680 Hb_087313_010 Hb_087313_010 Hb_171554_010--Hb_087313_010 Hb_001900_140 Hb_001900_140 Hb_171554_010--Hb_001900_140 Hb_012438_030 Hb_012438_030 Hb_171554_010--Hb_012438_030 Hb_012286_020 Hb_012286_020 Hb_171554_010--Hb_012286_020 Hb_002631_240 Hb_002631_240 Hb_000003_780--Hb_002631_240 Hb_005946_040 Hb_005946_040 Hb_000003_780--Hb_005946_040 Hb_002874_180 Hb_002874_180 Hb_000003_780--Hb_002874_180 Hb_007002_020 Hb_007002_020 Hb_000003_780--Hb_007002_020 Hb_000003_780--Hb_001900_140 Hb_001587_180 Hb_001587_180 Hb_000003_780--Hb_001587_180 Hb_000003_680--Hb_012286_020 Hb_000787_080 Hb_000787_080 Hb_000003_680--Hb_000787_080 Hb_000003_680--Hb_087313_010 Hb_021576_150 Hb_021576_150 Hb_000003_680--Hb_021576_150 Hb_002218_020 Hb_002218_020 Hb_000003_680--Hb_002218_020 Hb_102948_010 Hb_102948_010 Hb_000003_680--Hb_102948_010 Hb_087313_010--Hb_012438_030 Hb_087313_010--Hb_002218_020 Hb_001703_040 Hb_001703_040 Hb_087313_010--Hb_001703_040 Hb_000788_030 Hb_000788_030 Hb_087313_010--Hb_000788_030 Hb_087313_010--Hb_102948_010 Hb_004324_360 Hb_004324_360 Hb_087313_010--Hb_004324_360 Hb_001900_140--Hb_001587_180 Hb_006132_090 Hb_006132_090 Hb_001900_140--Hb_006132_090 Hb_007558_090 Hb_007558_090 Hb_001900_140--Hb_007558_090 Hb_003266_030 Hb_003266_030 Hb_001900_140--Hb_003266_030 Hb_007904_230 Hb_007904_230 Hb_001900_140--Hb_007904_230 Hb_001900_140--Hb_005946_040 Hb_012438_030--Hb_001703_040 Hb_012438_030--Hb_002218_020 Hb_000163_260 Hb_000163_260 Hb_012438_030--Hb_000163_260 Hb_002876_300 Hb_002876_300 Hb_012438_030--Hb_002876_300 Hb_012438_030--Hb_102948_010 Hb_000566_050 Hb_000566_050 Hb_012286_020--Hb_000566_050 Hb_012286_020--Hb_002218_020 Hb_012286_020--Hb_021576_150 Hb_012286_020--Hb_102948_010 Hb_000086_270 Hb_000086_270 Hb_012286_020--Hb_000086_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.2265 1.57155 4.46361 2.56068 0.821227 1.32326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.66943 1.73996 1.7689 1.0394 2.84974

CAGE analysis