Hb_010872_070

Information

Type -
Description -
Location Contig10872: 40542-44526
Sequence    

Annotation

kegg
ID rcu:RCOM_0853220
description hypothetical protein
nr
ID XP_002517434.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RUI9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0853220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02639: 40556-44529
cDNA
(Sanger)
(ID:Location)		 043_F17.ab1: 43647-44529

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010872_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_026048_110 0.0965156113 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
3 Hb_002042_170 0.1050296843 - - RING/U-box superfamily protein [Theobroma cacao]
4 Hb_002333_070 0.1145930649 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
5 Hb_000656_390 0.1147080219 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
6 Hb_013241_010 0.1157585008 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
7 Hb_007810_010 0.1204268564 - - PREDICTED: uncharacterized protein LOC105647655 isoform X1 [Jatropha curcas]
8 Hb_000256_040 0.1221304014 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
9 Hb_038574_010 0.1252385512 - - PREDICTED: vacuolar cation/proton exchanger 3-like isoform X2 [Populus euphratica]
10 Hb_004429_020 0.1256942633 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
11 Hb_005563_070 0.1270794828 - - PREDICTED: uncharacterized protein LOC105630108 [Jatropha curcas]
12 Hb_000120_640 0.12781158 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_005914_110 0.1281170775 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
14 Hb_004994_180 0.1282673544 - - malic enzyme, putative [Ricinus communis]
15 Hb_000256_090 0.1287781979 - - PREDICTED: uncharacterized protein LOC105637579 [Jatropha curcas]
16 Hb_000964_030 0.1294633372 - - ADP/ATP carrier 2 [Theobroma cacao]
17 Hb_005245_100 0.1295033458 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic-like [Jatropha curcas]
18 Hb_053709_050 0.1312345288 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_000951_130 0.1314483408 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
20 Hb_000069_640 0.1328168663 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]

Gene co-expression network

sample Hb_010872_070 Hb_010872_070 Hb_026048_110 Hb_026048_110 Hb_010872_070--Hb_026048_110 Hb_002042_170 Hb_002042_170 Hb_010872_070--Hb_002042_170 Hb_002333_070 Hb_002333_070 Hb_010872_070--Hb_002333_070 Hb_000656_390 Hb_000656_390 Hb_010872_070--Hb_000656_390 Hb_013241_010 Hb_013241_010 Hb_010872_070--Hb_013241_010 Hb_007810_010 Hb_007810_010 Hb_010872_070--Hb_007810_010 Hb_000256_090 Hb_000256_090 Hb_026048_110--Hb_000256_090 Hb_001717_010 Hb_001717_010 Hb_026048_110--Hb_001717_010 Hb_005162_090 Hb_005162_090 Hb_026048_110--Hb_005162_090 Hb_005563_070 Hb_005563_070 Hb_026048_110--Hb_005563_070 Hb_006275_020 Hb_006275_020 Hb_026048_110--Hb_006275_020 Hb_004774_020 Hb_004774_020 Hb_002042_170--Hb_004774_020 Hb_000156_090 Hb_000156_090 Hb_002042_170--Hb_000156_090 Hb_003925_040 Hb_003925_040 Hb_002042_170--Hb_003925_040 Hb_002042_170--Hb_000656_390 Hb_171900_020 Hb_171900_020 Hb_002042_170--Hb_171900_020 Hb_000566_050 Hb_000566_050 Hb_002333_070--Hb_000566_050 Hb_021576_150 Hb_021576_150 Hb_002333_070--Hb_021576_150 Hb_027506_040 Hb_027506_040 Hb_002333_070--Hb_027506_040 Hb_000122_190 Hb_000122_190 Hb_002333_070--Hb_000122_190 Hb_004965_110 Hb_004965_110 Hb_002333_070--Hb_004965_110 Hb_000951_130 Hb_000951_130 Hb_000656_390--Hb_000951_130 Hb_006970_050 Hb_006970_050 Hb_000656_390--Hb_006970_050 Hb_009288_010 Hb_009288_010 Hb_000656_390--Hb_009288_010 Hb_001723_100 Hb_001723_100 Hb_000656_390--Hb_001723_100 Hb_000152_330 Hb_000152_330 Hb_000656_390--Hb_000152_330 Hb_002272_030 Hb_002272_030 Hb_000656_390--Hb_002272_030 Hb_000432_090 Hb_000432_090 Hb_013241_010--Hb_000432_090 Hb_084490_010 Hb_084490_010 Hb_013241_010--Hb_084490_010 Hb_000815_240 Hb_000815_240 Hb_013241_010--Hb_000815_240 Hb_013241_010--Hb_003925_040 Hb_127311_010 Hb_127311_010 Hb_013241_010--Hb_127311_010 Hb_012239_020 Hb_012239_020 Hb_013241_010--Hb_012239_020 Hb_002043_030 Hb_002043_030 Hb_007810_010--Hb_002043_030 Hb_004218_020 Hb_004218_020 Hb_007810_010--Hb_004218_020 Hb_000008_440 Hb_000008_440 Hb_007810_010--Hb_000008_440 Hb_003657_010 Hb_003657_010 Hb_007810_010--Hb_003657_010 Hb_000120_640 Hb_000120_640 Hb_007810_010--Hb_000120_640 Hb_001541_070 Hb_001541_070 Hb_007810_010--Hb_001541_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.57972 17.3082 19.5915 15.8611 2.55813 5.21441
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.1818 10.3232 16.9847 6.42188 10.0235

CAGE analysis