Hb_026048_110

Information

Type -
Description -
Location Contig26048: 136872-140354
Sequence    

Annotation

kegg
ID rcu:RCOM_1689430
description prenyl-dependent CAAX protease, putative
nr
ID XP_012086802.1
description PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JMZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20517 PE=4 SV=1
Gene Ontology
ID GO:0016020
description prenyl-dependent caax

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27162: 136885-140318
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026048_110 0.0 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
2 Hb_000256_090 0.0765517246 - - PREDICTED: uncharacterized protein LOC105637579 [Jatropha curcas]
3 Hb_001717_010 0.0801952917 - - F-box and wd40 domain protein, putative [Ricinus communis]
4 Hb_005162_090 0.0913854357 - - PREDICTED: uncharacterized protein LOC105648425 [Jatropha curcas]
5 Hb_010872_070 0.0965156113 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005563_070 0.0968545388 - - PREDICTED: uncharacterized protein LOC105630108 [Jatropha curcas]
7 Hb_006275_020 0.0969797091 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
8 Hb_001863_360 0.0998054268 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
9 Hb_009288_010 0.1009601122 desease resistance Gene Name: Clp_N ERD1 protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_000029_060 0.1015874448 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
11 Hb_000069_640 0.1033434699 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
12 Hb_005245_100 0.1038438257 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic-like [Jatropha curcas]
13 Hb_062226_130 0.105386625 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
14 Hb_000567_230 0.1060116293 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
15 Hb_003929_070 0.1066193946 - - CBL-interacting serine/threonine-protein kinase 1 isoform 3 [Theobroma cacao]
16 Hb_002272_030 0.1075266981 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
17 Hb_000304_080 0.1075386955 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
18 Hb_000327_140 0.1075629045 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
19 Hb_000656_390 0.107966966 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
20 Hb_003607_130 0.1088453489 - - serine/threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_026048_110 Hb_026048_110 Hb_000256_090 Hb_000256_090 Hb_026048_110--Hb_000256_090 Hb_001717_010 Hb_001717_010 Hb_026048_110--Hb_001717_010 Hb_005162_090 Hb_005162_090 Hb_026048_110--Hb_005162_090 Hb_010872_070 Hb_010872_070 Hb_026048_110--Hb_010872_070 Hb_005563_070 Hb_005563_070 Hb_026048_110--Hb_005563_070 Hb_006275_020 Hb_006275_020 Hb_026048_110--Hb_006275_020 Hb_000230_460 Hb_000230_460 Hb_000256_090--Hb_000230_460 Hb_000003_680 Hb_000003_680 Hb_000256_090--Hb_000003_680 Hb_000256_090--Hb_005563_070 Hb_001178_010 Hb_001178_010 Hb_000256_090--Hb_001178_010 Hb_001191_080 Hb_001191_080 Hb_000256_090--Hb_001191_080 Hb_005245_100 Hb_005245_100 Hb_001717_010--Hb_005245_100 Hb_000029_060 Hb_000029_060 Hb_001717_010--Hb_000029_060 Hb_000329_230 Hb_000329_230 Hb_001717_010--Hb_000329_230 Hb_003607_130 Hb_003607_130 Hb_001717_010--Hb_003607_130 Hb_004916_010 Hb_004916_010 Hb_001717_010--Hb_004916_010 Hb_062226_130 Hb_062226_130 Hb_005162_090--Hb_062226_130 Hb_000738_020 Hb_000738_020 Hb_005162_090--Hb_000738_020 Hb_000869_080 Hb_000869_080 Hb_005162_090--Hb_000869_080 Hb_139294_010 Hb_139294_010 Hb_005162_090--Hb_139294_010 Hb_012022_040 Hb_012022_040 Hb_005162_090--Hb_012022_040 Hb_000221_190 Hb_000221_190 Hb_005162_090--Hb_000221_190 Hb_002042_170 Hb_002042_170 Hb_010872_070--Hb_002042_170 Hb_002333_070 Hb_002333_070 Hb_010872_070--Hb_002333_070 Hb_000656_390 Hb_000656_390 Hb_010872_070--Hb_000656_390 Hb_013241_010 Hb_013241_010 Hb_010872_070--Hb_013241_010 Hb_007810_010 Hb_007810_010 Hb_010872_070--Hb_007810_010 Hb_000603_160 Hb_000603_160 Hb_005563_070--Hb_000603_160 Hb_189216_010 Hb_189216_010 Hb_005563_070--Hb_189216_010 Hb_000704_030 Hb_000704_030 Hb_005563_070--Hb_000704_030 Hb_001141_420 Hb_001141_420 Hb_005563_070--Hb_001141_420 Hb_005563_070--Hb_005162_090 Hb_002572_020 Hb_002572_020 Hb_005563_070--Hb_002572_020 Hb_000120_130 Hb_000120_130 Hb_006275_020--Hb_000120_130 Hb_001500_060 Hb_001500_060 Hb_006275_020--Hb_001500_060 Hb_000015_170 Hb_000015_170 Hb_006275_020--Hb_000015_170 Hb_000103_340 Hb_000103_340 Hb_006275_020--Hb_000103_340 Hb_000061_030 Hb_000061_030 Hb_006275_020--Hb_000061_030 Hb_001761_120 Hb_001761_120 Hb_006275_020--Hb_001761_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9658 29.4433 27.6155 28.8788 8.21218 11.8426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8953 20.9704 20.7418 8.93632 21.9532

CAGE analysis