Hb_171900_020

Information

Type -
Description -
Location Contig171900: 8443-10510
Sequence    

Annotation

kegg
ID rcu:RCOM_1609120
description hypothetical protein
nr
ID XP_012083679.1
description PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KAK0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14610 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16095: 8637-10243 , PASA_asmbl_16096: 8779-10236
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171900_020 0.0 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
2 Hb_005146_080 0.1013487644 - - PREDICTED: uncharacterized protein LOC105636704 isoform X2 [Jatropha curcas]
3 Hb_004117_170 0.1090832555 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
4 Hb_002042_170 0.1117019543 - - RING/U-box superfamily protein [Theobroma cacao]
5 Hb_003925_040 0.1241786579 transcription factor TF Family: C2H2 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Jatropha curcas]
6 Hb_001235_170 0.1242185764 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
7 Hb_002053_130 0.125923614 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
8 Hb_006909_060 0.127039128 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
9 Hb_005663_070 0.1277912737 - - dehydrin protein [Manihot esculenta]
10 Hb_004774_020 0.1309765924 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
11 Hb_014068_050 0.1313639316 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
12 Hb_000925_030 0.1332284773 - - ATP-dependent RNA helicase, putative [Ricinus communis]
13 Hb_013358_020 0.1352097687 - - ccr4-associated factor, putative [Ricinus communis]
14 Hb_084490_010 0.1390606584 - - PREDICTED: protein root UVB sensitive 6 isoform X2 [Jatropha curcas]
15 Hb_004108_240 0.1399300992 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
16 Hb_001376_010 0.1402913104 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
17 Hb_003147_060 0.1432914367 - - syntaxin, plant, putative [Ricinus communis]
18 Hb_000749_070 0.144794443 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
19 Hb_001728_020 0.1450985473 - - PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Jatropha curcas]
20 Hb_007943_050 0.1454734597 - - peroxiredoxin, putative [Ricinus communis]

Gene co-expression network

sample Hb_171900_020 Hb_171900_020 Hb_005146_080 Hb_005146_080 Hb_171900_020--Hb_005146_080 Hb_004117_170 Hb_004117_170 Hb_171900_020--Hb_004117_170 Hb_002042_170 Hb_002042_170 Hb_171900_020--Hb_002042_170 Hb_003925_040 Hb_003925_040 Hb_171900_020--Hb_003925_040 Hb_001235_170 Hb_001235_170 Hb_171900_020--Hb_001235_170 Hb_002053_130 Hb_002053_130 Hb_171900_020--Hb_002053_130 Hb_004450_050 Hb_004450_050 Hb_005146_080--Hb_004450_050 Hb_005146_080--Hb_001235_170 Hb_006643_020 Hb_006643_020 Hb_005146_080--Hb_006643_020 Hb_014068_050 Hb_014068_050 Hb_005146_080--Hb_014068_050 Hb_000170_240 Hb_000170_240 Hb_005146_080--Hb_000170_240 Hb_000035_050 Hb_000035_050 Hb_004117_170--Hb_000035_050 Hb_013358_020 Hb_013358_020 Hb_004117_170--Hb_013358_020 Hb_018790_050 Hb_018790_050 Hb_004117_170--Hb_018790_050 Hb_007253_010 Hb_007253_010 Hb_004117_170--Hb_007253_010 Hb_000749_070 Hb_000749_070 Hb_004117_170--Hb_000749_070 Hb_001376_010 Hb_001376_010 Hb_004117_170--Hb_001376_010 Hb_004774_020 Hb_004774_020 Hb_002042_170--Hb_004774_020 Hb_000156_090 Hb_000156_090 Hb_002042_170--Hb_000156_090 Hb_002042_170--Hb_003925_040 Hb_010872_070 Hb_010872_070 Hb_002042_170--Hb_010872_070 Hb_000656_390 Hb_000656_390 Hb_002042_170--Hb_000656_390 Hb_003147_060 Hb_003147_060 Hb_003925_040--Hb_003147_060 Hb_003925_040--Hb_004774_020 Hb_084490_010 Hb_084490_010 Hb_003925_040--Hb_084490_010 Hb_009545_090 Hb_009545_090 Hb_003925_040--Hb_009545_090 Hb_004108_240 Hb_004108_240 Hb_003925_040--Hb_004108_240 Hb_001638_030 Hb_001638_030 Hb_001235_170--Hb_001638_030 Hb_002685_200 Hb_002685_200 Hb_001235_170--Hb_002685_200 Hb_001235_170--Hb_014068_050 Hb_001235_170--Hb_001376_010 Hb_012107_010 Hb_012107_010 Hb_002053_130--Hb_012107_010 Hb_002639_100 Hb_002639_100 Hb_002053_130--Hb_002639_100 Hb_005496_180 Hb_005496_180 Hb_002053_130--Hb_005496_180 Hb_001944_020 Hb_001944_020 Hb_002053_130--Hb_001944_020 Hb_000179_240 Hb_000179_240 Hb_002053_130--Hb_000179_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.73705 22.8474 13.4383 14.9661 2.98125 2.73432
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.78288 11.29 7.16133 6.22124 2.59926

CAGE analysis