Hb_012107_010

Information

Type -
Description -
Location Contig12107: 660-7484
Sequence    

Annotation

kegg
ID vvi:100250170
description TMV resistance protein N
nr
ID KDP28980.1
description hypothetical protein JCGZ_19531 [Jatropha curcas]
swissprot
ID Q9RBS2
description Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2
trembl
ID A0A067K9L2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19531 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06482: 1945-2045 , PASA_asmbl_06483: 3450-3718 , PASA_asmbl_06484: 3100-6793 , PASA_asmbl_06485: 3110-6135
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012107_010 0.0 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
2 Hb_002053_130 0.0760417463 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
3 Hb_001944_020 0.1168696832 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
4 Hb_000417_420 0.1191908261 - - PREDICTED: U-box domain-containing protein 17 [Jatropha curcas]
5 Hb_002639_100 0.1205606122 - - dehydrin [Hevea brasiliensis]
6 Hb_001500_030 0.1227487473 - - PREDICTED: uncharacterized protein At2g33490 isoform X2 [Jatropha curcas]
7 Hb_003747_210 0.123246837 - - PREDICTED: uncharacterized protein LOC105630240 [Jatropha curcas]
8 Hb_010661_010 0.1283254721 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
9 Hb_004108_240 0.1349956954 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
10 Hb_001437_010 0.1389331762 - - PREDICTED: probable receptor-like protein kinase At1g33260 [Jatropha curcas]
11 Hb_002217_090 0.139038797 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
12 Hb_000186_200 0.1396039522 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
13 Hb_000953_050 0.1396863887 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
14 Hb_000805_230 0.1401697283 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
15 Hb_003411_030 0.1412391757 - - hypothetical protein POPTR_0010s13590g [Populus trichocarpa]
16 Hb_138585_100 0.1428201529 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
17 Hb_005496_180 0.1434464322 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
18 Hb_006054_030 0.1443482831 - - PREDICTED: protein GPR107-like [Jatropha curcas]
19 Hb_002876_250 0.145222339 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
20 Hb_000252_210 0.1456977931 - - PREDICTED: uncharacterized protein LOC105644655 [Jatropha curcas]

Gene co-expression network

sample Hb_012107_010 Hb_012107_010 Hb_002053_130 Hb_002053_130 Hb_012107_010--Hb_002053_130 Hb_001944_020 Hb_001944_020 Hb_012107_010--Hb_001944_020 Hb_000417_420 Hb_000417_420 Hb_012107_010--Hb_000417_420 Hb_002639_100 Hb_002639_100 Hb_012107_010--Hb_002639_100 Hb_001500_030 Hb_001500_030 Hb_012107_010--Hb_001500_030 Hb_003747_210 Hb_003747_210 Hb_012107_010--Hb_003747_210 Hb_002053_130--Hb_002639_100 Hb_005496_180 Hb_005496_180 Hb_002053_130--Hb_005496_180 Hb_002053_130--Hb_001944_020 Hb_000179_240 Hb_000179_240 Hb_002053_130--Hb_000179_240 Hb_171900_020 Hb_171900_020 Hb_002053_130--Hb_171900_020 Hb_002701_220 Hb_002701_220 Hb_001944_020--Hb_002701_220 Hb_002217_090 Hb_002217_090 Hb_001944_020--Hb_002217_090 Hb_001944_020--Hb_003747_210 Hb_001944_020--Hb_001500_030 Hb_000179_230 Hb_000179_230 Hb_000417_420--Hb_000179_230 Hb_000417_420--Hb_002053_130 Hb_001437_010 Hb_001437_010 Hb_000417_420--Hb_001437_010 Hb_028207_040 Hb_028207_040 Hb_000417_420--Hb_028207_040 Hb_001472_130 Hb_001472_130 Hb_000417_420--Hb_001472_130 Hb_006935_010 Hb_006935_010 Hb_002639_100--Hb_006935_010 Hb_002572_050 Hb_002572_050 Hb_002639_100--Hb_002572_050 Hb_000038_040 Hb_000038_040 Hb_002639_100--Hb_000038_040 Hb_002639_100--Hb_003747_210 Hb_001500_030--Hb_002217_090 Hb_010661_010 Hb_010661_010 Hb_001500_030--Hb_010661_010 Hb_004128_030 Hb_004128_030 Hb_001500_030--Hb_004128_030 Hb_000912_100 Hb_000912_100 Hb_001500_030--Hb_000912_100 Hb_002876_210 Hb_002876_210 Hb_001500_030--Hb_002876_210 Hb_001500_030--Hb_003747_210 Hb_000110_300 Hb_000110_300 Hb_003747_210--Hb_000110_300 Hb_003747_210--Hb_002217_090 Hb_002915_060 Hb_002915_060 Hb_003747_210--Hb_002915_060 Hb_003747_210--Hb_010661_010 Hb_003747_210--Hb_004128_030 Hb_007576_200 Hb_007576_200 Hb_003747_210--Hb_007576_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.756859 5.49521 1.20728 2.57106 0.473784 0.533873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.919841 1.19988 1.11765 0.788526 0.923985

CAGE analysis