Hb_000038_040

Information

Type -
Description -
Location Contig38: 27227-29467
Sequence    

Annotation

kegg
ID rcu:RCOM_1192560
description basic 7S globulin 2 precursor small subunit, putative
nr
ID XP_002520371.1
description basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
swissprot
ID Q766C3
description Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1
trembl
ID B9S302
description Basic 7S globulin 2 small subunit, putative OS=Ricinus communis GN=RCOM_1192560 PE=3 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase nepenthesin-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000038_040 0.0 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
2 Hb_006846_020 0.0731632061 - - PREDICTED: uncharacterized protein LOC105648685 [Jatropha curcas]
3 Hb_006935_010 0.1092299119 - - PREDICTED: inositol transporter 1 isoform X1 [Gossypium raimondii]
4 Hb_000107_440 0.1201489996 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
5 Hb_007007_080 0.1240217275 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000776_050 0.1338201099 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
7 Hb_007382_100 0.1355813636 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
8 Hb_004208_140 0.1382948519 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
9 Hb_000345_500 0.1384249166 - - PREDICTED: peroxisomal adenine nucleotide carrier 1 [Jatropha curcas]
10 Hb_002639_100 0.1408837665 - - dehydrin [Hevea brasiliensis]
11 Hb_000069_330 0.1462618407 - - protein with unknown function [Ricinus communis]
12 Hb_002477_120 0.147836437 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
13 Hb_002876_070 0.1500923875 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
14 Hb_011716_050 0.1510857246 - - serine acetyltransferase [Hevea brasiliensis]
15 Hb_003207_100 0.1533627823 transcription factor TF Family: TCP PREDICTED: transcription factor TCP9-like [Jatropha curcas]
16 Hb_001472_130 0.1553030268 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
17 Hb_001318_140 0.1579498775 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
18 Hb_002154_020 0.1579830547 - - protein with unknown function [Ricinus communis]
19 Hb_000221_060 0.1584193592 - - -
20 Hb_000272_110 0.1615207532 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000038_040 Hb_000038_040 Hb_006846_020 Hb_006846_020 Hb_000038_040--Hb_006846_020 Hb_006935_010 Hb_006935_010 Hb_000038_040--Hb_006935_010 Hb_000107_440 Hb_000107_440 Hb_000038_040--Hb_000107_440 Hb_007007_080 Hb_007007_080 Hb_000038_040--Hb_007007_080 Hb_000776_050 Hb_000776_050 Hb_000038_040--Hb_000776_050 Hb_007382_100 Hb_007382_100 Hb_000038_040--Hb_007382_100 Hb_002477_120 Hb_002477_120 Hb_006846_020--Hb_002477_120 Hb_006846_020--Hb_007007_080 Hb_006846_020--Hb_000107_440 Hb_004208_140 Hb_004208_140 Hb_006846_020--Hb_004208_140 Hb_003207_100 Hb_003207_100 Hb_006846_020--Hb_003207_100 Hb_002639_100 Hb_002639_100 Hb_006935_010--Hb_002639_100 Hb_006935_010--Hb_006846_020 Hb_001049_160 Hb_001049_160 Hb_006935_010--Hb_001049_160 Hb_006935_010--Hb_007382_100 Hb_018790_080 Hb_018790_080 Hb_006935_010--Hb_018790_080 Hb_000803_060 Hb_000803_060 Hb_000107_440--Hb_000803_060 Hb_011716_050 Hb_011716_050 Hb_000107_440--Hb_011716_050 Hb_000107_440--Hb_002477_120 Hb_000107_440--Hb_007007_080 Hb_000069_330 Hb_000069_330 Hb_007007_080--Hb_000069_330 Hb_003224_030 Hb_003224_030 Hb_007007_080--Hb_003224_030 Hb_003752_120 Hb_003752_120 Hb_007007_080--Hb_003752_120 Hb_007007_080--Hb_002477_120 Hb_005496_160 Hb_005496_160 Hb_007007_080--Hb_005496_160 Hb_002154_020 Hb_002154_020 Hb_007007_080--Hb_002154_020 Hb_002053_030 Hb_002053_030 Hb_000776_050--Hb_002053_030 Hb_000345_500 Hb_000345_500 Hb_000776_050--Hb_000345_500 Hb_009476_110 Hb_009476_110 Hb_000776_050--Hb_009476_110 Hb_017857_010 Hb_017857_010 Hb_000776_050--Hb_017857_010 Hb_031108_010 Hb_031108_010 Hb_000776_050--Hb_031108_010 Hb_000473_080 Hb_000473_080 Hb_000776_050--Hb_000473_080 Hb_001318_140 Hb_001318_140 Hb_007382_100--Hb_001318_140 Hb_000087_100 Hb_000087_100 Hb_007382_100--Hb_000087_100 Hb_001329_080 Hb_001329_080 Hb_007382_100--Hb_001329_080 Hb_001619_160 Hb_001619_160 Hb_007382_100--Hb_001619_160 Hb_001898_130 Hb_001898_130 Hb_007382_100--Hb_001898_130 Hb_003430_070 Hb_003430_070 Hb_007382_100--Hb_003430_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.493545 10.3429 4.05001 3.27989 0.22381 0.625865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.692611 2.0241 0.920526 2.65805 1.31285

CAGE analysis