Hb_009476_110

Information

Type -
Description -
Location Contig9476: 114672-116751
Sequence    

Annotation

kegg
ID pop:POPTR_0010s19430g
description POPTRDRAFT_833758; hypothetical protein
nr
ID XP_012087081.1
description PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
swissprot
ID Q9XEE8
description Probable protein phosphatase 2C 30 OS=Arabidopsis thaliana GN=PP2C5 PE=2 SV=1
trembl
ID A0A067LC20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01238 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63301: 114766-116801
cDNA
(Sanger)
(ID:Location)		 025_J18.ab1: 114766-115806 , 040_M04.ab1: 114766-115801

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009476_110 0.0 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
2 Hb_003633_150 0.0790304613 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
3 Hb_000776_050 0.1095806892 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
4 Hb_031108_010 0.1165755642 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
5 Hb_001898_010 0.1188165829 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
6 Hb_005375_070 0.1212389458 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
7 Hb_003905_040 0.1223986896 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
8 Hb_001318_140 0.1225110069 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
9 Hb_005282_010 0.124288749 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
10 Hb_001226_170 0.1262331234 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
11 Hb_001247_160 0.1271287902 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
12 Hb_003430_070 0.1275154635 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
13 Hb_007382_100 0.1304827888 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
14 Hb_005080_020 0.1305361108 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
15 Hb_001623_410 0.1305494271 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
16 Hb_149484_010 0.1311383404 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor-like [Eucalyptus grandis]
17 Hb_017857_010 0.1313062235 - - -
18 Hb_000359_080 0.1331387747 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
19 Hb_000402_030 0.1333568843 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
20 Hb_000087_100 0.1369449095 - - PREDICTED: cellulose synthase-like protein D3 [Jatropha curcas]

Gene co-expression network

sample Hb_009476_110 Hb_009476_110 Hb_003633_150 Hb_003633_150 Hb_009476_110--Hb_003633_150 Hb_000776_050 Hb_000776_050 Hb_009476_110--Hb_000776_050 Hb_031108_010 Hb_031108_010 Hb_009476_110--Hb_031108_010 Hb_001898_010 Hb_001898_010 Hb_009476_110--Hb_001898_010 Hb_005375_070 Hb_005375_070 Hb_009476_110--Hb_005375_070 Hb_003905_040 Hb_003905_040 Hb_009476_110--Hb_003905_040 Hb_001247_160 Hb_001247_160 Hb_003633_150--Hb_001247_160 Hb_005282_010 Hb_005282_010 Hb_003633_150--Hb_005282_010 Hb_182970_010 Hb_182970_010 Hb_003633_150--Hb_182970_010 Hb_000567_110 Hb_000567_110 Hb_003633_150--Hb_000567_110 Hb_001405_060 Hb_001405_060 Hb_003633_150--Hb_001405_060 Hb_002053_030 Hb_002053_030 Hb_000776_050--Hb_002053_030 Hb_000345_500 Hb_000345_500 Hb_000776_050--Hb_000345_500 Hb_017857_010 Hb_017857_010 Hb_000776_050--Hb_017857_010 Hb_000776_050--Hb_031108_010 Hb_000473_080 Hb_000473_080 Hb_000776_050--Hb_000473_080 Hb_124677_020 Hb_124677_020 Hb_031108_010--Hb_124677_020 Hb_001579_070 Hb_001579_070 Hb_031108_010--Hb_001579_070 Hb_155946_030 Hb_155946_030 Hb_031108_010--Hb_155946_030 Hb_000086_620 Hb_000086_620 Hb_031108_010--Hb_000086_620 Hb_001898_010--Hb_005375_070 Hb_000402_030 Hb_000402_030 Hb_001898_010--Hb_000402_030 Hb_004712_160 Hb_004712_160 Hb_001898_010--Hb_004712_160 Hb_007574_050 Hb_007574_050 Hb_001898_010--Hb_007574_050 Hb_098160_010 Hb_098160_010 Hb_001898_010--Hb_098160_010 Hb_005375_070--Hb_000402_030 Hb_005375_070--Hb_017857_010 Hb_005000_050 Hb_005000_050 Hb_005375_070--Hb_005000_050 Hb_002343_020 Hb_002343_020 Hb_005375_070--Hb_002343_020 Hb_149484_010 Hb_149484_010 Hb_005375_070--Hb_149484_010 Hb_003905_040--Hb_149484_010 Hb_001357_060 Hb_001357_060 Hb_003905_040--Hb_001357_060 Hb_002783_140 Hb_002783_140 Hb_003905_040--Hb_002783_140 Hb_007193_030 Hb_007193_030 Hb_003905_040--Hb_007193_030 Hb_003905_040--Hb_000402_030 Hb_001369_020 Hb_001369_020 Hb_003905_040--Hb_001369_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22582 62.2157 28.846 26.7857 0.231377 0.583622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.11309 2.71839 2.1165 10.2395 12.494

CAGE analysis